Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq11 95.1 1e-14
seq32 91.5 1e-13
seq9 89.7 4e-13
seq59 86.0 5e-12
seq141 82.4 7e-11
seq77 82.4 7e-11
>seq11
Length=43820709
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| | || || ||| | |
Sbjct 25320957 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 25320898
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGG-ATTCCACCTGA 25114
||||| || ||| | || |||| |||| ||| ||||| |||||| || ||||||||
Sbjct 25320897 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAA-GAAGGGTATCCCACCTGA 25320842
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| | || |||||||||||||| | || |||| ||||| | || |
Sbjct 25320841 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACGCTCTCAGACAA 25320782
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || ||||| ||||| || || | |||||
Sbjct 25320781 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 25320746
>seq32
Length=21366645
Score = 91.5 bits (100), Expect = 1e-13
Identities = 168/242 (69%), Gaps = 11/242 (5%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||| | || ||||| |||| | || || || |||||| | || || ||||| |
Sbjct 21077664 ATGTAGATCTTTGTGAAGATACTCACGGGCAAGATCATCACCCTTGAGGTCGAGTCCAGT 21077723
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| | ||| | || |||| |||| ||| ||||||||||| || |||||||||
Sbjct 21077724 GACACCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAAGAAGGTATCCCACCTGAC 21077780
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | | || |||||||||||||| | || |||| |||||| | || |||
Sbjct 21077781 CAGCAGTGTCTAATCTTTGCCGGCAAACAGATGGAGGATGGCCGCACTCTCTCAGACTAC 21077840
Query 25176 AATATTCAAAAA----GAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231
|| || || ||| || ||||| || || | |||||| ||| |||| || ||||
Sbjct 21077841 AACATCCAGAAATCTGGAGTCCACCCTGCACCTGGTGCTATATCTATGAGGTGG-CATTA 21077899
Query 25232 TT 25233
||
Sbjct 21077900 TT 21077901
>seq9
Length=44311105
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/215 (70%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| | || || ||| | |
Sbjct 19097129 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 19097188
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || |||| |||| ||| ||||| || || || |||||||||
Sbjct 19097189 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 19097245
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || |||||| ||||||| | || |||| | ||| | || |||
Sbjct 19097246 CAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCTCACGCT--CAGAATAC 19097303
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| ||||| || || | |||||
Sbjct 19097304 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 19097338
Score = 86.0 bits (94), Expect = 5e-12
Identities = 165/238 (69%), Gaps = 9/238 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| | || || ||| | |
Sbjct 14505647 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 14505706
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| | ||| | || |||| |||| ||| ||||| ||||| || |||| ||||
Sbjct 14505707 GACACCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAAGGTATCCCACTTGAC 14505763
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | | || |||||||||||||| | || |||| ||||| | || |||
Sbjct 14505764 CAGCAGTGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACGCT--CAGACTAC 14505821
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233
|| || || || || ||||| || || | ||||| | || |||| || ||||||
Sbjct 14505822 AACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 14505878
>seq59
Length=14671897
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064
|| ||| | |||||| ||||| |||| ||||||| | || || ||| | ||||||
Sbjct 11744904 ATCTTTCTGAAGACTCTGACCAGTAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACC 11744963
Query 25065 ATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124
|| || | ||| ||| ||| ||||| ||||| || || |||||||||||| |
Sbjct 11744964 ATTAAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAACAGAGA 11745023
Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184
| || |||||| | ||||| | ||||||| |||| | || ||||| |||||
Sbjct 11745024 TTGATCTTTGCCAGGAAACAGCTGGAAGATGGGCGCAACCTATCTGACTACAACATTCAG 11745083
Query 25185 AAAGAATCCACGCTACA 25201
|| || ||||| || ||
Sbjct 11745084 AAGGAGTCCACCCTTCA 11745100
>seq141
Length=4680182
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/215 (69%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||| | || ||||| | ||| | || ||||| ||||||| | || || ||| | |
Sbjct 4589708 ATGTAGATCTTTGTGAGGACCCTCACAGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 4589767
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| |||| |||| |||| ||| ||||| || || || |||||||||
Sbjct 4589768 GACACCATTGAG--ACTGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 4589824
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| |||| | || |||| ||||||||| | || |||| | |||| | || | |
Sbjct 4589825 CAGCAGCATCTGATCCTTGCTGGCAAACAACTGGAGGATGGACACACTCTCTCAGACTGC 4589884
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||| ||||| | || || | |||||
Sbjct 4589885 AACATCCAGAAACAATCCGCCCTGCACCTGGTGCT 4589919
>seq77
Length=10698663
Score = 82.4 bits (90), Expect = 7e-11
Identities = 117/165 (71%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || ||||||| | || |||||| | |
Sbjct 10127654 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 10127713
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| || ||| || || ||||| || || || |||||
Sbjct 10127714 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCGACCAG 10127773
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163
||| || | || ||||||||||| || | ||||||| ||||||
Sbjct 10127774 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACT 10127818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433313814737090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |