Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 1e-14 seq32 91.5 1e-13 seq9 89.7 4e-13 seq59 86.0 5e-12 seq141 82.4 7e-11 seq77 82.4 7e-11 >seq11 Length=43820709 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 25320957 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 25320898 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGG-ATTCCACCTGA 25114 ||||| || ||| | || |||| |||| ||| ||||| |||||| || |||||||| Sbjct 25320897 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAA-GAAGGGTATCCCACCTGA 25320842 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || |||||||||||||| | || |||| ||||| | || | Sbjct 25320841 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACGCTCTCAGACAA 25320782 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||| ||||| || || | ||||| Sbjct 25320781 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 25320746 >seq32 Length=21366645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/242 (69%), Gaps = 11/242 (5%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| | || ||||| |||| | || || || |||||| | || || ||||| | Sbjct 21077664 ATGTAGATCTTTGTGAAGATACTCACGGGCAAGATCATCACCCTTGAGGTCGAGTCCAGT 21077723 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| ||| ||||||||||| || ||||||||| Sbjct 21077724 GACACCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAAGAAGGTATCCCACCTGAC 21077780 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || |||||||||||||| | || |||| |||||| | || ||| Sbjct 21077781 CAGCAGTGTCTAATCTTTGCCGGCAAACAGATGGAGGATGGCCGCACTCTCTCAGACTAC 21077840 Query 25176 AATATTCAAAAA----GAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || ||| || ||||| || || | |||||| ||| |||| || |||| Sbjct 21077841 AACATCCAGAAATCTGGAGTCCACCCTGCACCTGGTGCTATATCTATGAGGTGG-CATTA 21077899 Query 25232 TT 25233 || Sbjct 21077900 TT 21077901 >seq9 Length=44311105 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 19097129 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 19097188 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| ||||| || || || ||||||||| Sbjct 19097189 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 19097245 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || |||||| ||||||| | || |||| | ||| | || ||| Sbjct 19097246 CAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCTCACGCT--CAGAATAC 19097303 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || | ||||| Sbjct 19097304 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 19097338 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/238 (69%), Gaps = 9/238 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 14505647 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 14505706 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| ||| ||||| ||||| || |||| |||| Sbjct 14505707 GACACCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAAGGTATCCCACTTGAC 14505763 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || |||||||||||||| | || |||| ||||| | || ||| Sbjct 14505764 CAGCAGTGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGCACGCT--CAGACTAC 14505821 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || || || ||||| || || | ||||| | || |||| || |||||| Sbjct 14505822 AACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 14505878 >seq59 Length=14671897 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || ||| | |||||| ||||| |||| ||||||| | || || ||| | |||||| Sbjct 11744904 ATCTTTCTGAAGACTCTGACCAGTAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACC 11744963 Query 25065 ATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 || || | ||| ||| ||| ||||| ||||| || || |||||||||||| | Sbjct 11744964 ATTAAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAACAGAGA 11745023 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || |||||| | ||||| | ||||||| |||| | || ||||| ||||| Sbjct 11745024 TTGATCTTTGCCAGGAAACAGCTGGAAGATGGGCGCAACCTATCTGACTACAACATTCAG 11745083 Query 25185 AAAGAATCCACGCTACA 25201 || || ||||| || || Sbjct 11745084 AAGGAGTCCACCCTTCA 11745100 >seq141 Length=4680182 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| | || ||||| | ||| | || ||||| ||||||| | || || ||| | | Sbjct 4589708 ATGTAGATCTTTGTGAGGACCCTCACAGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 4589767 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| |||| |||| |||| ||| ||||| || || || ||||||||| Sbjct 4589768 GACACCATTGAG--ACTGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 4589824 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | || |||| ||||||||| | || |||| | |||| | || | | Sbjct 4589825 CAGCAGCATCTGATCCTTGCTGGCAAACAACTGGAGGATGGACACACTCTCTCAGACTGC 4589884 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||| ||||| | || || | ||||| Sbjct 4589885 AACATCCAGAAACAATCCGCCCTGCACCTGGTGCT 4589919 >seq77 Length=10698663 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | | Sbjct 10127654 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 10127713 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| || || ||||| || || || ||||| Sbjct 10127714 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCGACCAG 10127773 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||| || | || ||||||||||| || | ||||||| |||||| Sbjct 10127774 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACT 10127818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433313814737090