Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq37 232 7e-56 seq111 113 5e-20 seq22 96.9 4e-15 seq98 91.5 2e-13 >seq37 Length=19344684 Score = 232 bits (256), Expect = 7e-56 Identities = 527/789 (67%), Gaps = 3/789 (0%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || ||||| || ||||| || ||| | | |||||||| || | Sbjct 211433 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 211492 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || || || | ||| || | || || ||| || | | Sbjct 211493 AGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCACTGATAATT 211552 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| | || |||||| ||||| | ||| |||| | ||| || Sbjct 211553 ATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGAACATCAGGCAAGCG 211612 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || | || | |||| ||||| | || || Sbjct 211613 AAATCACAGTGTAAACCCTCATCTC-TGCCAGTAAGTTCATTAGAAAATGTGAGGCCAGG 211671 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 211672 CATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCC 211731 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || ||||| || ||| |||| || | | || || | | ||| Sbjct 211732 TTCCACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTTGTCCCCAACCCA 211791 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || ||||| | |||||| | ||||| ||||| || || || Sbjct 211792 GAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCATTGAAGAG 211851 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | |||| | |||| |||||| || || || | ||| ||| |||||||| Sbjct 211852 AAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATATATTTCAGA 211911 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || | ||| || |||||||| || |||||||| ||||| |||||||| || Sbjct 211912 ATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTCTGTGATCTGAAC 211971 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| ||||| ||| || | |||||||| ||||| |||| ||||||||| || Sbjct 211972 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACTTGCTGCAAAGAA 212031 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 ||||| | || |||||| | | || | || || || ||||| | | | Sbjct 212032 AGCCAGAACGTGGGATATAAAGTATCTCCCCTCGGGCTTCAGGGATTCCCAGTGCCAAAC 212091 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || || || || || || || | | ||||| || || || || | || || || | Sbjct 212092 GTCCTTGGACAGGTCCACCTCCTTGGTGGTCCAGAAGGAGGCCTCCCCCTTCTTATATGT 212151 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAG 93696 | ||| || || | || | || || ||||||||||| | | ||||| ||| | || Sbjct 212152 CTGCCAGATATCGGGGTACTCGATGGGGAATATGACAAAGTGGTGTGGGTTTTCTCTCAG 212211 Query 93697 TAACGGCTC 93705 | |||||| Sbjct 212212 CAGCGGCTC 212220 >seq111 Length=7367144 Score = 113 bits (124), Expect = 5e-20 Identities = 271/409 (66%), Gaps = 11/409 (3%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || | | ||||| | ||||||||||||| |||||||| ||| Sbjct 4918168 TCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTTCTTGAGCCAGAATATTGATGCA 4918227 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 ||| ||||||| | || | ||||| || | ||||| || ||| |||||| Sbjct 4918228 AAAGAACCAGAAGAGAAGGTGCCTTCTACTGTGGCAAAGGCTGCAACACGTTCTCTGTGG 4918287 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 | || || | ||||| || |||||||| || | ||||| | |||||| Sbjct 4918288 GTAGCATCTTTGTTCACAATCCAACACAAGGCCCAATCTGCCTCCTTCTTGACACAAGGC 4918347 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTA---TGTA 93370 | ||||||| ||||| || || | || | || | | | || | || ||| Sbjct 4918348 ATCCTTTCGATGGCGTTGAAGAGAAATTCCCTTTCTT-----TGTTGTCTTTAACATGTG 4918402 Query 93371 TCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAG 93430 || | || ||| || ||| ||||||| | || ||||| ||||||||||| || ||| Sbjct 4918403 TCAGTAAAGAGATTATCCATGTCAGAATATATGTTTTCCATAGCAATTTGGAAGCCATAG 4918462 Query 93431 AAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTG 93490 || || | ||| || || |||||||| | || ||| || | |||| || Sbjct 4918463 AAGCA---GGTTTCTGTAGCTTGAACTTCTTGGACACATTGCTCCACCAAGTTTTTATCA 4918519 Query 93491 ACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539 ||||| ||| | |||||||||| |||| || ||||| |||||||| Sbjct 4918520 ACTATGCCACGGCATGCTGCAAAGAAAGTCAGAATATGGGATATAAAAT 4918568 >seq22 Length=27210278 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 93347 TCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTC 93406 |||| | |||| |||||| || || || | ||| ||||||||||||||| | || Sbjct 23199810 TCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTT 23199869 Query 93407 TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA 93466 ||||| ||||||||||| || |||||||| | ||||| || ||||| |||||||| | Sbjct 23199870 TCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTA 23199929 Query 93467 AATCTCTCTAC 93477 |||| ||| || Sbjct 23199930 AATCGCTCCAC 23199940 >seq98 Length=8319558 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 93381 GAGAATACATTTCAGAATGGACATTCTCC-ATTGCAATTTGGAATCCGTAGAAACATCTA 93439 |||| || | ||||||||| | || ||| || ||||||||||| || |||||||| Sbjct 4732346 GAGACTATACTTCAGAATGTAGGTTTTCCCATAGCAATTTGGAAGCCATAGAAACAGTGG 4732287 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 ||||| || | ||| |||| || |||| |||||| |||||||| ||||| ||| Sbjct 4732286 GCTTCTGTAAGCTGAGCTTCCTGGTTAAATTGCTCTACCTAGTTTTCATTTACTATGCCA 4732227 Query 93500 TCGGATGCTGCaaaaaaaGCCA 93521 |||| ||| ||| |||||||| Sbjct 4732226 TCGGTGGCTTCAACAAAAGCCA 4732205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556842103398640