Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq95 95.1 2e-14
seq30 95.1 2e-14
seq228 89.7 1e-12
seq212 89.7 1e-12
seq23 87.8 4e-12
seq28 86.0 1e-11
>seq95
Length=8788572
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||
Sbjct 6722763 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 6722704
Query 142112 CCCCGCCAGAGA 142123
|||| ||||||
Sbjct 6722703 TCCCGGCAGAGA 6722692
>seq30
Length=22521080
Score = 95.1 bits (104), Expect = 2e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558
||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 16615265 AGAAAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 16615324
Query 142559 CGAGCCCCACATCGGGC 142575
|||||||||| | ||||
Sbjct 16615325 CGAGCCCCACGTTGGGC 16615341
Score = 91.5 bits (100), Expect = 3e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 16587697 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 16587638
Query 142564 CCCACATCGGGCAGAAGT 142581
||||| | |||| ||||
Sbjct 16587637 CCCACGTTGGGCGTAAGT 16587620
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 16595797 AGCCCGACTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 16595856
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 16595857 CCCCACGTTGGGC 16595869
>seq228
Length=665946
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 50640 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 50699
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 50700 CCCACGTTGGGC 50711
>seq212
Length=1039878
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 54386 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 54327
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 54326 CCCACGTTGGGC 54315
>seq23
Length=26360658
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 108168 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTTGTGGGTTCGAG 108109
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 108108 CCCCACGTTGGGC 108096
>seq28
Length=23605852
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||| | |||||||||||||||||| | ||||||||||||| ||| |||||||| |||
Sbjct 564416 GCCCAGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCAGGGTTGTGGGTTCAAGC 564475
Query 142564 CCCACATCGGGC 142575
||||||| ||||
Sbjct 564476 CCCACATTGGGC 564487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027801427638926
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |