Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq95 95.1 2e-14 seq30 95.1 2e-14 seq228 89.7 1e-12 seq212 89.7 1e-12 seq23 87.8 4e-12 seq28 86.0 1e-11 >seq95 Length=8788572 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 6722763 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 6722704 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 6722703 TCCCGGCAGAGA 6722692 >seq30 Length=22521080 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 16615265 AGAAAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 16615324 Query 142559 CGAGCCCCACATCGGGC 142575 |||||||||| | |||| Sbjct 16615325 CGAGCCCCACGTTGGGC 16615341 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 16587697 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 16587638 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| |||| Sbjct 16587637 CCCACGTTGGGCGTAAGT 16587620 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 16595797 AGCCCGACTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 16595856 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 16595857 CCCCACGTTGGGC 16595869 >seq228 Length=665946 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 50640 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 50699 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 50700 CCCACGTTGGGC 50711 >seq212 Length=1039878 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 54386 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 54327 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 54326 CCCACGTTGGGC 54315 >seq23 Length=26360658 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||| Sbjct 108168 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTTGTGGGTTCGAG 108109 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 108108 CCCCACGTTGGGC 108096 >seq28 Length=23605852 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | |||||||||||||||||| | ||||||||||||| ||| |||||||| ||| Sbjct 564416 GCCCAGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCAGGGTTGTGGGTTCAAGC 564475 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 564476 CCCACATTGGGC 564487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027801427638926