Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq134 102 6e-17 seq38 102 6e-17 seq52 100 2e-16 seq54 84.2 2e-11 seq218 82.4 5e-11 seq8 82.4 5e-11 >seq134 Length=5851302 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 3733156 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 3733215 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | |||| ||| | | || | ||| || || ||||| || || | ||| | Sbjct 3733216 CTCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 3733275 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 3733276 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 3733335 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||||||||| |||||||||||| | || || Sbjct 3733336 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 3733371 >seq38 Length=19171412 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 14820746 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 14820687 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | |||| ||| | | || | ||| || || ||||| || || | ||| | Sbjct 14820686 CTCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 14820627 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 14820626 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 14820567 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||||||||||| |||||||||||| | || || Sbjct 14820566 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 14820531 >seq52 Length=16356641 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 10618872 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 10618931 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || ||||| || || | ||| | Sbjct 10618932 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 10618991 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 10618992 GCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 10619051 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTAC 22047 ||| ||||||||||| |||||||||||| | || |||| Sbjct 10619052 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTAC 10619089 >seq54 Length=16265076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 21832 AAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG 21891 ||| ||| || ||| | ||||| | || || || ||||| ||| | || | ||| || Sbjct 5607227 AAAAGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGCTGAACCCT 5607168 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 | || || | || | ||| || ||| ||||| || || | ||| | | Sbjct 5607167 CGGATACTACAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATC 5607108 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 | || ||||| |||||||||||||| ||||| |||||| | | | || | || |||| Sbjct 5607107 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTATTTTGTCTGACTACA 5607048 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 | ||||||||||| |||||||||||| | || || Sbjct 5607047 ACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 5607014 >seq218 Length=888862 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 683783 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 683724 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||||||| | |||||||||||| | || || Sbjct 683723 AACATTCAGAAGAAGTCTACTCTTCATCTTGTGTT 683689 >seq8 Length=45331107 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||| | |||| ||||||||| |||||||||||| | ||| || | || ||| Sbjct 31945557 CAGCAAAGATTGATCTATGCTGGCAAGCAACTAGAAGATGGACGTACTCTGTCTGACTAC 31945616 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || ||||| ||||| |||||||||||| |||| || Sbjct 31945617 AACATTCAAAAGGAGTCTACTCTTCATCTGGTGTT 31945651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358113076560844