Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 3e-15 seq22 87.8 2e-12 >seq12 Length=39782659 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| ||||| || || | ||| Sbjct 25689294 TGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 25689235 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||| || |||||||||||||| ||||| |||||||||| | || || || || Sbjct 25689234 ATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 25689175 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || || || |||||||||| Sbjct 25689174 CAGAGGGCATGGCATGGAGGCAGCGCCATCA 25689144 >seq22 Length=27210278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 |||||||| || || | ||| || || ||||||||||| | || | ||| || || Sbjct 26912597 AGTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGCATGTACAAAATCACCT 26912656 Query 20231 GGTCTAAGACCAGTAACATGAGCA--AGCATATAAGTTAAGAGGGAATAGCTGGCAATGT 20288 || | || || || ||| ||| | ||| || || | |||| ||||||| |||| Sbjct 26912657 GGCTTCAGGCCCGT--GATGTGCATGATCATGTACGTGAGCAGGGCGTAGCTGGTGATGT 26912714 Query 20289 TAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCAC 20348 | ||||| | || | |||| ||||| || ||||| |||||||||||||| ||||||| Sbjct 26912715 TGAAAGGCATACCTAGGCCCACGTCTCTTGATCTCTGGTACAGCTGACAGGACAGCTCAC 26912774 Query 20349 CGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || || || || | || || || || | |||||||| Sbjct 26912775 TGTTCACCACGTAGAACTGGCAGAGGGCATGGCATGGGGGCAACGCCATCA 26912825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441357980908240