Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_009334.1
Length=172764
Score E
Sequences producing significant alignments: (Bits) Value
seq38 105 7e-18
>seq38
Length=19171412
Score = 105 bits (116), Expect = 7e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920
|||| ||||| || ||||| ||| |||| || |||||||| || ||||||||||| || |
Sbjct 18494165 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 18494224
Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980
|||| || ||||| ||||| ||||| || ||| || || || || || |||| ||||
Sbjct 18494225 TGCCCCAAGCTGAGAACCATGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAA 18494284
Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008
| || ||||| | |||| | |||||
Sbjct 18494285 AGCTGAAGACTTTCAGGCTGAGGCTGCG 18494312
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139
|||| || || ||||| | ||||||||||||||||| |||||||| || || ||||||
Sbjct 18496496 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 18496555
Query 10140 TAGAAGCATACATGACAATTAA 10161
||||||| ||||||||||| ||
Sbjct 18496556 TAGAAGCCTACATGACAATGAA 18496577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552698242533440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |