Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq9 87.8 1e-12 >seq9 Length=44311105 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/231 (70%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| ||||||||||| || || ||| ||||||||| |||||||| |||| Sbjct 14505871 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG-- 14505814 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || | || |||| || ||||||||||||||||| | |||||| || | || Sbjct 14505813 -AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGG 14505755 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTC 34076 | | || |||| | | | |||| |||| || | || || | ||| | | || Sbjct 14505754 GATACCTTCCTTGT-CTTGAATTTTGGCTT--TGACATTCTCAGTGGTGTCACTGGGCTC 14505698 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | || || || || || || || || ||||||||||| ||||| Sbjct 14505697 GACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| |||||||| || || || ||| ||| |||||||||||||| |||| Sbjct 3708446 CCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 3708387 Query 33961 AAT-TGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || ||| | || |||| || || |||||||||||||| | |||||| || Sbjct 3708386 AGTGTGCCGC-CATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTC 3708334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397049401914172