Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq33 107 2e-18
seq9 100 3e-16
seq11 96.9 4e-15
seq234 91.5 2e-13
seq180 91.5 2e-13
seq35 91.5 2e-13
seq95 89.7 6e-13
seq90 89.7 6e-13
>seq33
Length=21137282
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| | ||||| |||| |||| || ||| || || || ||||| ||||
Sbjct 15373757 ACCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 15373698
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| | | || || |||||||| || || || ||||| | ||||||||||| ||
Sbjct 15373697 AAGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGG 15373638
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || ||||| ||| ||| || || | | | | ||||| || | |||||
Sbjct 15373637 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 15373578
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214
|| | ||||||||| ||||| || || ||||| || ||||| |||||||| ||
Sbjct 15373577 CTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 15373524
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 7635312 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 7635371
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 7635372 ATACTAACGAGGA 7635384
>seq9
Length=44311105
Score = 100 bits (110), Expect = 3e-16
Identities = 154/216 (71%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||||| |||| ||| ||| || || || ||||| || | || || | |
Sbjct 19097341 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTG--AGCGTGAGGCCA 19097284
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||| || | || ||||| || ||||||||||| | ||| | | |||||||
Sbjct 19097283 TCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 19097224
Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | ||| |||| | ||||| || | | ||||| || | || || || | |||||
Sbjct 19097223 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 19097165
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| |||||||| || ||||| |||||||| |||||
Sbjct 19097164 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129
>seq11
Length=43820709
Score = 96.9 bits (106), Expect = 4e-15
Identities = 152/215 (71%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 41995 GCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGT 42054
||| ||||| |||| ||| ||| || || || |||| || | || || || | |
Sbjct 25320744 GCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGCGTGCGGCCAT 25320803
Query 42055 CATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGT 42114
| || ||||| || || || ||||| || ||||||||||| | ||| | | || |||||
Sbjct 25320804 CCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTTCTTGT 25320863
Query 42115 CCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
| ||| |||| | ||||| || | | ||||| || | || || || | ||||||
Sbjct 25320864 -CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 25320922
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || || ||||| |||||||| |||||
Sbjct 25320923 GTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957
>seq234
Length=554799
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 109202 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 109261
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 109262 ATACTAACGAGGA 109274
>seq180
Length=3031737
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 40749 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 40690
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 40689 ATACTAACGAGGA 40677
>seq35
Length=19873202
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2549749 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2549690
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 2549689 ATACTAACGAGGA 2549677
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 4941913 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4941854
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 4941853 ATACTAACGAGGA 4941841
>seq95
Length=8788572
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 8778309 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8778368
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 8778369 TACTAACGAGGA 8778380
>seq90
Length=9212255
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 7720362 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7720303
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 7720302 TACTAACGAGGA 7720291
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 7730039 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7729980
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 7729979 TACTAACGAGGA 7729968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543194561630240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |