Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq33 107 2e-18 seq9 100 3e-16 seq11 96.9 4e-15 seq234 91.5 2e-13 seq180 91.5 2e-13 seq35 91.5 2e-13 seq95 89.7 6e-13 seq90 89.7 6e-13 >seq33 Length=21137282 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| |||| |||| || ||| || || || ||||| |||| Sbjct 15373757 ACCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 15373698 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 15373697 AAGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGG 15373638 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| ||| ||| || || | | | | ||||| || | ||||| Sbjct 15373637 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 15373578 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | ||||||||| ||||| || || ||||| || ||||| |||||||| || Sbjct 15373577 CTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 15373524 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 7635312 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 7635371 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 7635372 ATACTAACGAGGA 7635384 >seq9 Length=44311105 Score = 100 bits (110), Expect = 3e-16 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| ||| || || || ||||| || | || || | | Sbjct 19097341 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTG--AGCGTGAGGCCA 19097284 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || | || ||||| || ||||||||||| | ||| | | ||||||| Sbjct 19097283 TCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 19097224 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| |||| | ||||| || | | ||||| || | || || || | ||||| Sbjct 19097223 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 19097165 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| |||||||| || ||||| |||||||| ||||| Sbjct 19097164 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129 >seq11 Length=43820709 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 41995 GCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGT 42054 ||| ||||| |||| ||| ||| || || || |||| || | || || || | | Sbjct 25320744 GCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGCGTGCGGCCAT 25320803 Query 42055 CATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGT 42114 | || ||||| || || || ||||| || ||||||||||| | ||| | | || ||||| Sbjct 25320804 CCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTTCTTGT 25320863 Query 42115 CCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 | ||| |||| | ||||| || | | ||||| || | || || || | |||||| Sbjct 25320864 -CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 25320922 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || ||||| |||||||| ||||| Sbjct 25320923 GTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957 >seq234 Length=554799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 109202 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 109261 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 109262 ATACTAACGAGGA 109274 >seq180 Length=3031737 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 40749 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 40690 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 40689 ATACTAACGAGGA 40677 >seq35 Length=19873202 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2549749 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2549690 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 2549689 ATACTAACGAGGA 2549677 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4941913 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4941854 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4941853 ATACTAACGAGGA 4941841 >seq95 Length=8788572 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8778309 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8778368 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 8778369 TACTAACGAGGA 8778380 >seq90 Length=9212255 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7720362 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7720303 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 7720302 TACTAACGAGGA 7720291 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7730039 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7729980 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 7729979 TACTAACGAGGA 7729968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543194561630240