Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq134 95.1 9e-15
seq38 91.5 1e-13
seq9 91.5 1e-13
seq11 89.7 4e-13
seq52 87.8 1e-12
seq85 86.0 4e-12
seq48 86.0 4e-12
seq8 86.0 4e-12
>seq134
Length=5851302
Score = 95.1 bits (104), Expect = 9e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||| || || | |||||| ||||| || || || |||||||| ||
Sbjct 3733386 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3733327
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | ||||| | ||| |||||||| | |||| | || || || |||
Sbjct 3733326 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3733267
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| |||||| ||||||| ||||| ||| ||
Sbjct 3733266 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 3733207
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | ||| ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 3733206 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 3733157
>seq38
Length=19171412
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| | | ||| || || | |||||| ||||| || || || |||||||| ||
Sbjct 14820516 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 14820575
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | ||||| | ||| |||||||| | |||| | || || || |||
Sbjct 14820576 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 14820635
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| |||||| ||||||| ||||| ||| ||
Sbjct 14820636 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 14820695
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | ||| ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 14820696 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 14820745
>seq9
Length=44311105
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | | || | || ||||| || || || || |||||||| ||
Sbjct 14505873 TGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC-- 14505816
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|||| | | | || || | |||||||| || |||||| || ||| ||||| ||
Sbjct 14505815 TGAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTG 14505756
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || ||||||||||| ||||||| ||| ||| | || | || || || || |
Sbjct 14505755 GGATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGA 14505696
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | ||| ||||| || || || || || || ||||| || |||||
Sbjct 14505695 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647
>seq11
Length=43820709
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | || | || ||||| || ||||| || ||||||| ||
Sbjct 25320729 TGCCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTG 25320788
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | | || || | |||||||| || |||||| |||||| ||||| ||
Sbjct 25320789 AGAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 25320848
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || || | |||||| ||||||| ||| ||| | || || || || || || |
Sbjct 25320849 GGATACCCTTCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 25320908
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | ||| ||||| || ||||| || || || ||||| || |||||
Sbjct 25320909 CCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957
>seq52
Length=16356641
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023
||| || | |||||| ||||| || || || |||||||| || | | | | | ||
Sbjct 10619088 TAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 10619029
Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083
||| | ||| |||||||| | |||| | || || || |||||||||||||| ||
Sbjct 10619028 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATC 10618969
Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143
|| ||| |||||| ||||||| ||||| ||| || || | ||| |||||
Sbjct 10618968 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 10618909
Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| || || || ||||| || ||||| ||||| ||
Sbjct 10618908 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 10618873
>seq85
Length=9676098
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| | | ||| || || | |||||| ||||| || ||||| |||||||| ||
Sbjct 5982655 CCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 5982596
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | |||||| | || |||||||| | ||| | || || || |||
Sbjct 5982595 AAAGTACGTCTGTCTTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTGATCAGGAGGA 5982536
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| |||||| ||||| | ||||| ||| ||
Sbjct 5982535 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACC 5982476
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | ||| ||||| || ||||| || ||||| || ||||| ||||| ||
Sbjct 5982475 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 5982426
>seq48
Length=16679805
Score = 86.0 bits (94), Expect = 4e-12
Identities = 154/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| | | ||| || || | |||||| ||||| || ||||| |||||||| ||
Sbjct 11416469 CCACCAGGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 11416528
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | |||| | ||| |||||||| | |||| | || || || |||
Sbjct 11416529 AAAGTACATCCACCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 11416588
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || |||| ||||||| ||||| | |||| |||| ||
Sbjct 11416589 ATTCCTTCCTTATCCTGGATTTCAGCTTTTACACTTTCTGTCATATCCAGGGTTTCAACC 11416648
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15174
| | ||| ||||| || ||||| || ||||| |||||||| |||
Sbjct 11416649 TTGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACAAAAATGTGC 11416693
>seq8
Length=45331107
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| | | ||| || || | |||||| ||||| || ||||| |||||||| ||
Sbjct 31945666 CCACCATGAAGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 31945607
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | | ||||||| ||| |||||||| || ||||| | || || || |||
Sbjct 31945606 AGAGTACGTCCATCTTCTAGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGGA 31945547
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| ||||| ||||| | ||||| ||| ||
Sbjct 31945546 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAACC 31945487
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
| | ||| || || || | || ||||||| | ||||| ||||| ||
Sbjct 31945486 TGGAGGGTGATAGTCTTCTCCGTAAGAGTTTGTGTGAAAATCTGCATTTT 31945437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357380300549510
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