Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq134 95.1 9e-15 seq38 91.5 1e-13 seq9 91.5 1e-13 seq11 89.7 4e-13 seq52 87.8 1e-12 seq85 86.0 4e-12 seq48 86.0 4e-12 seq8 86.0 4e-12 >seq134 Length=5851302 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || || || |||||||| || Sbjct 3733386 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3733327 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 3733326 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3733267 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 3733266 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 3733207 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 3733206 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 3733157 >seq38 Length=19171412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| ||||| || || || |||||||| || Sbjct 14820516 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 14820575 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 14820576 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 14820635 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 14820636 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 14820695 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 14820696 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 14820745 >seq9 Length=44311105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| | | || | || ||||| || || || || |||||||| || Sbjct 14505873 TGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC-- 14505816 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | || || | |||||||| || |||||| || ||| ||||| || Sbjct 14505815 TGAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTG 14505756 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||||||| ||| ||| | || | || || || || | Sbjct 14505755 GGATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGA 14505696 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || || || || || ||||| || ||||| Sbjct 14505695 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647 >seq11 Length=43820709 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| | || | || ||||| || ||||| || ||||||| || Sbjct 25320729 TGCCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTG 25320788 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || | |||||||| || |||||| |||||| ||||| || Sbjct 25320789 AGAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 25320848 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || | |||||| ||||||| ||| ||| | || || || || || || | Sbjct 25320849 GGATACCCTTCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 25320908 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || ||||| || || || ||||| || ||||| Sbjct 25320909 CCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957 >seq52 Length=16356641 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| || | |||||| ||||| || || || |||||||| || | | | | | || Sbjct 10619088 TAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 10619029 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| | ||| |||||||| | |||| | || || || |||||||||||||| || Sbjct 10619028 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATC 10618969 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||| |||||| ||||||| ||||| ||| || || | ||| ||||| Sbjct 10618968 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 10618909 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || ||||| || ||||| ||||| || Sbjct 10618908 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 10618873 >seq85 Length=9676098 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 5982655 CCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 5982596 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | |||||| | || |||||||| | ||| | || || || ||| Sbjct 5982595 AAAGTACGTCTGTCTTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTGATCAGGAGGA 5982536 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | ||||| ||| || Sbjct 5982535 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACC 5982476 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 5982475 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 5982426 >seq48 Length=16679805 Score = 86.0 bits (94), Expect = 4e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 11416469 CCACCAGGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 11416528 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | |||| | ||| |||||||| | |||| | || || || ||| Sbjct 11416529 AAAGTACATCCACCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 11416588 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || |||| ||||||| ||||| | |||| |||| || Sbjct 11416589 ATTCCTTCCTTATCCTGGATTTCAGCTTTTACACTTTCTGTCATATCCAGGGTTTCAACC 11416648 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15174 | | ||| ||||| || ||||| || ||||| |||||||| ||| Sbjct 11416649 TTGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACAAAAATGTGC 11416693 >seq8 Length=45331107 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 31945666 CCACCATGAAGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 31945607 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||||| ||| |||||||| || ||||| | || || || ||| Sbjct 31945606 AGAGTACGTCCATCTTCTAGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGGA 31945547 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||||| ||||| | ||||| ||| || Sbjct 31945546 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAACC 31945487 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | ||| || || || | || ||||||| | ||||| ||||| || Sbjct 31945486 TGGAGGGTGATAGTCTTCTCCGTAAGAGTTTGTGTGAAAATCTGCATTTT 31945437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357380300549510