Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq71 98.7 9e-16
seq134 95.1 1e-14
seq38 91.5 1e-13
seq9 87.8 2e-12
seq116 86.0 6e-12
seq88 86.0 6e-12
seq52 86.0 6e-12
seq33 86.0 6e-12
seq85 82.4 7e-11
>seq71
Length=11673789
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| |||||||| || || ||||| || | ||||| ||| || ||||| || ||
Sbjct 72269 GTTGACTCTTTCTGGATGTTGTAGTCAGGAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 72210
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | | |||||| ||| | || ||||| ||||| ||| ||| || ||||
Sbjct 72209 GCAAAGATGAGCCTCTGCTGGTCGTGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 72150
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | ||||| |||||| || ||| || || | ||| | || ||||||||||| ||
Sbjct 72149 ACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 72090
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 72089 TTCACAAAGATCTGCAT 72073
>seq134
Length=5851302
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || |||||| | ||| | |||||||| || ||||| ||||| ||
Sbjct 3733389 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCA 3733330
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| || || ||| || || || || ||||| |||||| || |||||||| |||
Sbjct 3733329 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 3733270
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| ||| ||| || ||| | | ||| | || || | ||
Sbjct 3733269 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCA 3733210
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||| ||| | || || || || || ||||| || |||||||||||
Sbjct 3733209 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3733160
>seq38
Length=19171412
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| | | || |||||| | ||| | |||||||| || ||||| ||||| ||
Sbjct 14820513 GCACCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCA 14820572
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| || || ||| || || || || ||||| |||||| || |||||||| |||
Sbjct 14820573 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 14820632
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| ||| ||| || ||| | | ||| | || || | ||
Sbjct 14820633 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCA 14820692
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||| ||| | || || || || || ||||| || |||||||||||
Sbjct 14820693 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 14820742
>seq9
Length=44311105
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||||| || | || |||||||| || || ||||| || | |||| | |
Sbjct 19097341 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTG--AGCGTGAGGCCA 19097284
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || |||||||| | || | |||| |||||||| || || || || |||||||||
Sbjct 19097283 TCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 19097224
Query 127019 TCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
| | ||| ||| || |||| | || | |||||| | |||||| || | ||| |
Sbjct 19097223 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 19097165
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| || || || || ||||| ||||||||
Sbjct 19097164 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129
>seq116
Length=6990774
Score = 86.0 bits (94), Expect = 6e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || || |||||| | ||| | ||||||| |||||||| ||||| ||
Sbjct 541734 GCACCACCACGACTTCTCAACACAAGATGAAAAATAGACTCCTTTTGAATGTTGTAGTCA 541675
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| || | ||| || || || || ||||| |||||| || |||||||| |||
Sbjct 541674 GACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 541615
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| ||| ||| || ||| | | ||| | || |||| | ||
Sbjct 541614 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAAGGTTCA 541555
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| | || ||| | || || || | || ||||| ||||||||||||||
Sbjct 541554 GCCTTGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 541505
>seq88
Length=9397244
Score = 86.0 bits (94), Expect = 6e-12
Identities = 156/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||| |||| | || | || |||||||| || || ||||| ||
Sbjct 1074121 CCACCTCGCAGGTGCAGCACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 1074180
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || |||||||| ||||| | |||| |||||||||| | ||
Sbjct 1074181 AGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGGG 1074240
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||| | ||| ||| || |||| | || | |||||| | ||||||
Sbjct 1074241 ATACCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 1074299
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111
| | ||| | || ||||| || || || || ||||| ||||||
Sbjct 1074300 CTTAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 1074345
>seq52
Length=16356641
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 126902 AACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCG 126961
||||| | ||| | |||||||| || ||||| ||||| || || || || |||
Sbjct 10619087 AACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 10619028
Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021
|| || || || ||||| |||||| || ||||| || ||||| || || ||||| |||
Sbjct 10619027 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCC 10618968
Query 127022 GTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081
||| || ||| | | ||| | || |||| || || |||| ||| | ||
Sbjct 10618967 TGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTC 10618908
Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || || ||||| || |||||||||||
Sbjct 10618907 TTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10618876
>seq33
Length=21137282
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| |||| || | || |||||||| || || ||||| || | ||| | |
Sbjct 15373744 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCA 15373685
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || || |||| | | |||||| |||||||| ||||| |||||
Sbjct 15373684 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 15373625
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | ||||| |||||| | ||| || || | || |
Sbjct 15373624 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATG 15373565
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||||||||| || || || || ||||||||
Sbjct 15373564 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15373530
>seq85
Length=9676098
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| | | || |||||| | ||| | |||||||| |||||||| ||||| ||
Sbjct 5982658 GCACCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCA 5982599
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| || || || || || | || ||||| ||||| || |||||||| |||
Sbjct 5982598 GACAAAGTACGTCTGTCTTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTGATCAGGA 5982539
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||| ||| ||| || ||| | | ||| || |||| ||
Sbjct 5982538 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCA 5982479
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||| ||| | || || || || || ||||| || |||||||||||
Sbjct 5982478 ACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 5982429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475484835060640
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