Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq71 98.7 9e-16 seq134 95.1 1e-14 seq38 91.5 1e-13 seq9 87.8 2e-12 seq116 86.0 6e-12 seq88 86.0 6e-12 seq52 86.0 6e-12 seq33 86.0 6e-12 seq85 82.4 7e-11 >seq71 Length=11673789 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || | ||||| ||| || ||||| || || Sbjct 72269 GTTGACTCTTTCTGGATGTTGTAGTCAGGAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 72210 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| ||| | || ||||| ||||| ||| ||| || |||| Sbjct 72209 GCAAAGATGAGCCTCTGCTGGTCGTGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 72150 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| |||||| || ||| || || | ||| | || ||||||||||| || Sbjct 72149 ACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 72090 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 72089 TTCACAAAGATCTGCAT 72073 >seq134 Length=5851302 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| || ||||| ||||| || Sbjct 3733389 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCA 3733330 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 3733329 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 3733270 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || || | || Sbjct 3733269 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCA 3733210 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 3733209 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3733160 >seq38 Length=19171412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | |||||||| || ||||| ||||| || Sbjct 14820513 GCACCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCA 14820572 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 14820573 GACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 14820632 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || || | || Sbjct 14820633 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCA 14820692 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 14820693 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 14820742 >seq9 Length=44311105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || |||||||| || || ||||| || | |||| | | Sbjct 19097341 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTG--AGCGTGAGGCCA 19097284 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| | || | |||| |||||||| || || || || ||||||||| Sbjct 19097283 TCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 19097224 Query 127019 TCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 | | ||| ||| || |||| | || | |||||| | |||||| || | ||| | Sbjct 19097223 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 19097165 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || ||||| |||||||| Sbjct 19097164 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129 >seq116 Length=6990774 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || || |||||| | ||| | ||||||| |||||||| ||||| || Sbjct 541734 GCACCACCACGACTTCTCAACACAAGATGAAAAATAGACTCCTTTTGAATGTTGTAGTCA 541675 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 541674 GACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 541615 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| | || Sbjct 541614 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGAAGGTTCA 541555 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | | || ||| | || || || | || ||||| |||||||||||||| Sbjct 541554 GCCTTGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 541505 >seq88 Length=9397244 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| |||| | || | || |||||||| || || ||||| || Sbjct 1074121 CCACCTCGCAGGTGCAGCACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 1074180 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| ||||| | |||| |||||||||| | || Sbjct 1074181 AGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGGG 1074240 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||| | ||| ||| || |||| | || | |||||| | |||||| Sbjct 1074241 ATACCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 1074299 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 | | ||| | || ||||| || || || || ||||| |||||| Sbjct 1074300 CTTAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 1074345 >seq52 Length=16356641 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 126902 AACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCG 126961 ||||| | ||| | |||||||| || ||||| ||||| || || || || ||| Sbjct 10619087 AACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 10619028 Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 || || || || ||||| |||||| || ||||| || ||||| || || ||||| ||| Sbjct 10619027 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCC 10618968 Query 127022 GTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081 ||| || ||| | | ||| | || |||| || || |||| ||| | || Sbjct 10618967 TGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTC 10618908 Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || ||||| || ||||||||||| Sbjct 10618907 TTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10618876 >seq33 Length=21137282 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || | ||| | | Sbjct 15373744 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCA 15373685 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||| |||||||| ||||| ||||| Sbjct 15373684 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 15373625 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | ||||| |||||| | ||| || || | || | Sbjct 15373624 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATG 15373565 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 15373564 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15373530 >seq85 Length=9676098 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | |||||||| |||||||| ||||| || Sbjct 5982658 GCACCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCA 5982599 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || || || || | || ||||| ||||| || |||||||| ||| Sbjct 5982598 GACAAAGTACGTCTGTCTTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTGATCAGGA 5982539 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| || |||| || Sbjct 5982538 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCA 5982479 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 5982478 ACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 5982429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475484835060640