Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq98 183 4e-41 seq14 109 8e-19 >seq98 Length=8319558 Score = 183 bits (202), Expect = 4e-41 Identities = 175/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||||||||||| || || || ||||| || |||||||| || Sbjct 8274848 GTCTGGAACAACTGCTCATCACCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 8274789 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 |||||||| || |||||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 8274788 CTGTTGTGCTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 8274729 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | ||||| ||||| ||||||| || || |||| || | || | ||| | Sbjct 8274728 ACTTCCTGTCCCACGGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCG 8274669 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 8274668 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 8274625 Score = 154 bits (170), Expect = 2e-32 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| || ||||| || || ||||| |||||||| | || || || | ||| Sbjct 8276539 AAGGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 8276480 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || |||||||| || || || || ||||| Sbjct 8276479 TTGAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGGCGGGAGAACATATGACA 8276420 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || | || | || ||||||| ||| Sbjct 8276419 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATAGTCTCACCAAAG 8276360 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | | ||| || || || | || || | | Sbjct 8276359 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATTGCATCAATG 8276300 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||| |||| || ||| ||||| || || ||||| ||| Sbjct 8276299 TCACCATAGAGTGCTTTCAGCTCTGCAGCCATTTCTTTCTCTCCT 8276255 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| ||| | |||||||| || |||||| ||| ||| | || Sbjct 8273703 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 8273644 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| |||| |||||||||||| Sbjct 8273643 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTGGAGCCCTGGGGATC 8273584 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | || || ||| |||||||||| ||||||| || || | Sbjct 8273583 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCACTTGAATCAGGAAGCTG 8273524 Query 10301 CGCCTTACCTGA 10312 | ||||||||| Sbjct 8273523 CTTCTTACCTGA 8273512 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 ||||||||| || || ||||| ||||||||| ||| || ||||| || | ||| ||||| Sbjct 8273090 ACCTTTCACACCCAGGGGAGTGGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTATA 8273031 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| || || || || ||||||||||| ||||||||||| || | |||||| || Sbjct 8273030 ATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTTGG 8272971 Query 10509 GGGACTGTCAATCA 10522 ||||| ||||||| Sbjct 8272970 CGGACTCTCAATCA 8272957 Score = 93.3 bits (102), Expect = 6e-14 Identities = 191/284 (67%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || | ||||| |||||||| || |||| | ||| || | | | || Sbjct 8275430 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCCAGTAACATA 8275371 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || || ||| ||| || |||| ||| Sbjct 8275370 GAGTTGTTGTAGATAAACTGTTGATAGTTGTAGTTCTGGTCATGAATTTGAAAGGTGTCA 8275311 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| | ||||||||||| ||||| || || || || || |||||| Sbjct 8275310 GGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATACGATTTTGGTAC 8275251 Query 9616 TGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTG 9675 || || | ||| |||| || |||||||| | || | |||||| || || || Sbjct 8275250 TGGAATTGTTTGTTGAAAAGTAGTTCTGGGTCAAATTTAAGTTTGAAGTGATAGCCACTC 8275191 Query 9676 AGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | ||||| ||||| | | || | ||| ||||| || || || Sbjct 8275190 AAGTGCTGTACATAGTCTTCAATCACAATCTTAATAGTCTCTCC 8275147 >seq14 Length=37227512 Score = 109 bits (120), Expect = 8e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || ||||||| || || | || || || || ||||| || |||||||| Sbjct 49266 GTGGCCGTCTTGACGATGTTAAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTAT 49325 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 49326 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAAGGAGCCCCAATCTCT 49385 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG-TA 9111 || || ||||| || ||||| | ||| | ||||| | || | |||| | | || Sbjct 49386 ATCATACTCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAA-GAAGCAGCCCGGGGTA 49444 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| | | |||||||| || || ||||||||||| Sbjct 49445 GAACTCCAAGGCATCAATGTCTCCATACAACTCCTCCAACTCTGCTGCCATCTCCTTCTC 49504 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 49505 TCCTACAAG 49513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723703700832400