Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq98 183 4e-41
seq14 109 8e-19
>seq98
Length=8319558
Score = 183 bits (202), Expect = 4e-41
Identities = 175/224 (78%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || ||||||||||| ||||||||||| || || || ||||| || |||||||| ||
Sbjct 8274848 GTCTGGAACAACTGCTCATCACCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 8274789
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
|||||||| || |||||||| || ||||| |||||||| | ||| ||||| | ||||||
Sbjct 8274788 CTGTTGTGCTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 8274729
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
||||| | ||||| ||||| ||||||| || || |||| || | || | ||| |
Sbjct 8274728 ACTTCCTGTCCCACGGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCG 8274669
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
|||| || |||||||| ||||| |||||||| || || |||||
Sbjct 8274668 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 8274625
Score = 154 bits (170), Expect = 2e-32
Identities = 205/285 (72%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| || ||||| || || ||||| |||||||| | || || || | |||
Sbjct 8276539 AAGGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 8276480
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| ||||| || || || || || ||||| || |||||||| || || || || |||||
Sbjct 8276479 TTGAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGGCGGGAGAACATATGACA 8276420
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| || || || || | || | || ||||||| |||
Sbjct 8276419 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATAGTCTCACCAAAG 8276360
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||| | ||||| || ||||| || | | | ||| || || || | || || | |
Sbjct 8276359 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATTGCATCAATG 8276300
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| |||||||| |||| || ||| ||||| || || ||||| |||
Sbjct 8276299 TCACCATAGAGTGCTTTCAGCTCTGCAGCCATTTCTTTCTCTCCT 8276255
Score = 122 bits (134), Expect = 1e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| ||| | |||||||| || |||||| ||| ||| | ||
Sbjct 8273703 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 8273644
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| |||| ||||||||||||
Sbjct 8273643 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTGGAGCCCTGGGGATC 8273584
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300
||||| || | || | | || || ||| |||||||||| ||||||| || || |
Sbjct 8273583 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCACTTGAATCAGGAAGCTG 8273524
Query 10301 CGCCTTACCTGA 10312
| |||||||||
Sbjct 8273523 CTTCTTACCTGA 8273512
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448
||||||||| || || ||||| ||||||||| ||| || ||||| || | ||| |||||
Sbjct 8273090 ACCTTTCACACCCAGGGGAGTGGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTATA 8273031
Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508
|||||| || || || || ||||||||||| ||||||||||| || | |||||| ||
Sbjct 8273030 ATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTTGG 8272971
Query 10509 GGGACTGTCAATCA 10522
||||| |||||||
Sbjct 8272970 CGGACTCTCAATCA 8272957
Score = 93.3 bits (102), Expect = 6e-14
Identities = 191/284 (67%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || | ||||| |||||||| || |||| | ||| || | | | ||
Sbjct 8275430 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCCAGTAACATA 8275371
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| | || |||| || || ||| ||| || |||| |||
Sbjct 8275370 GAGTTGTTGTAGATAAACTGTTGATAGTTGTAGTTCTGGTCATGAATTTGAAAGGTGTCA 8275311
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| | ||||||||||| ||||| || || || || || ||||||
Sbjct 8275310 GGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATACGATTTTGGTAC 8275251
Query 9616 TGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTG 9675
|| || | ||| |||| || |||||||| | || | |||||| || || ||
Sbjct 8275250 TGGAATTGTTTGTTGAAAAGTAGTTCTGGGTCAAATTTAAGTTTGAAGTGATAGCCACTC 8275191
Query 9676 AGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| ||||| ||||| | | || | ||| ||||| || || ||
Sbjct 8275190 AAGTGCTGTACATAGTCTTCAATCACAATCTTAATAGTCTCTCC 8275147
>seq14
Length=37227512
Score = 109 bits (120), Expect = 8e-19
Identities = 175/249 (70%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || ||||||| || || | || || || || ||||| || ||||||||
Sbjct 49266 GTGGCCGTCTTGACGATGTTAAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTAT 49325
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
|||| || |||||| ||| | | ||| || || | |||||| |||||||| | |||
Sbjct 49326 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAAGGAGCCCCAATCTCT 49385
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG-TA 9111
|| || ||||| || ||||| | ||| | ||||| | || | |||| | | ||
Sbjct 49386 ATCATACTCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAA-GAAGCAGCCCGGGGTA 49444
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || || | ||| ||||| | | |||||||| || || |||||||||||
Sbjct 49445 GAACTCCAAGGCATCAATGTCTCCATACAACTCCTCCAACTCTGCTGCCATCTCCTTCTC 49504
Query 9172 ACCTACAAG 9180
||||||||
Sbjct 49505 TCCTACAAG 49513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723703700832400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |