Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq33 132 5e-26
seq71 125 8e-24
seq79 104 3e-17
seq11 102 9e-17
seq77 96.9 4e-15
seq9 96.9 4e-15
seq21 93.3 5e-14
seq19 91.5 2e-13
seq27 87.8 2e-12
seq2 84.2 2e-11
>seq33
Length=21137282
Score = 132 bits (146), Expect = 5e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| | ||||| ||||| |||| || ||| || ||||| |||||||| ||
Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|||||| | | || || ||||||||||| || || || | | ||||||||||| ||
Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||||| ||| |||||| ||| | | | | ||||| || | |||||
Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||| ||||||||| ||||| ||||| || || || ||||| |||||||||
Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 15373526
>seq71
Length=11673789
Score = 125 bits (138), Expect = 8e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| || || | ||||| ||||| | || || ||| || ||||| |||||||| |
Sbjct 72300 GCCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAGG 72241
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485
|||||||| | || || ||||||||||| || || || | | |||||||||| ||
Sbjct 72240 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGGG 72181
Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| || ||||| ||| |||||| ||||| | | | ||||| || | |||||
Sbjct 72180 GATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCAC 72121
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||| |||||||| ||||| ||||| || || |||||||| |||||||||
Sbjct 72120 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 72069
>seq79
Length=10412959
Score = 104 bits (114), Expect = 3e-17
Identities = 166/239 (69%), Gaps = 7/239 (3%)
Strand=Plus/Minus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| || || | ||||| ||||| |||| || ||| || ||||| |||||||| ||
Sbjct 108434 GCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 108375
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC------ 46479
|||||||| | || || ||||||||||| || || || | | |||||| ||
Sbjct 108374 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGAG 108315
Query 46480 -GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538
|| || | || ||||| ||| |||||| ||| | | | | ||||| || |
Sbjct 108314 AGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGG 108255
Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||||| |||| |||||||| ||||| |||| || || ||||||| |||||||||
Sbjct 108254 GCTCCACTTCCAGGGTGATGGTCTTGCCGGTCATGGTCTTCGCAAAGATCTGCATTTTG 108196
>seq11
Length=43820709
Score = 102 bits (112), Expect = 9e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 46380 GCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGT 46439
||| |||||| |||| || ||| || ||||| |||| ||| || || ||||| | |
Sbjct 25320744 GCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGCGTGCGGCCAT 25320803
Query 46440 CGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 46499
| || ||||| |||||||| ||||||| ||||||||||| | || | | || |||||
Sbjct 25320804 CCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTTCTTGT 25320863
Query 46500 CCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGG 46559
| || || |||| || | | ||||| || | || || || | |||||||
Sbjct 25320864 CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 25320923
Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| ||||| || || || || |||||||| |||||
Sbjct 25320924 TCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957
>seq77
Length=10698663
Score = 96.9 bits (106), Expect = 4e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480
|| || |||||||| | || || |||||||||||||| || || | | ||||||||||
Sbjct 10127826 TCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCG 10127767
Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540
| || | || ||||| ||| |||||| ||| | | | | ||||| || |
Sbjct 10127766 GGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGC 10127707
Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| |||| |||||||| ||||| ||||| || || || ||||| |||||
Sbjct 10127706 TCCACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 10127654
>seq9
Length=44311105
Score = 96.9 bits (106), Expect = 4e-15
Identities = 151/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| |||| || ||| || ||||| ||||| || || | ||| | |
Sbjct 19097341 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTGA--GCGTGAGGCCA 19097284
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||| |||| ||| ||||||| ||||||||||| | || | | |||||||
Sbjct 19097283 TCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 19097224
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
|| || || |||| || | | ||||| || | || || || | ||||||
Sbjct 19097223 TCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 19097164
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||||||| || || || |||||||| |||||
Sbjct 19097163 GTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129
>seq21
Length=27742158
Score = 93.3 bits (102), Expect = 5e-14
Identities = 170/255 (67%), Gaps = 23/255 (9%)
Strand=Plus/Minus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| ||||| | ||||| ||||| |||| || ||| || ||||| ||||| || ||
Sbjct 616588 GCCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 616529
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG----- 46480
|||||||| || || || ||||||||||| || || || | | ||||||||||
Sbjct 616528 AAGAGTGCGGTCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGCGGGG 616469
Query 46481 ------------------GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| || | || ||||| ||| |||||| ||||| |
Sbjct 616468 GTGGGGTGGGGGGTGGGCGCGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTT 616409
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| || | ||||| | || |||||||| ||||| ||||| || || ||
Sbjct 616408 TCGATGGTGTCACTAGGCTCCACCTTCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 616349
Query 46583 AAGATTTGCATTTTG 46597
||||| |||||||||
Sbjct 616348 AAGATCTGCATTTTG 616334
>seq19
Length=29834108
Score = 91.5 bits (100), Expect = 2e-13
Identities = 158/232 (68%), Gaps = 12/232 (5%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| | ||| |||| || ||| || ||||| |||||||| || ||||||| |
Sbjct 19334718 ACGCAGGAGCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCTGCC 19334659
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT------------CGGCCGG 46485
||| || ||||||||||| || || || | | ||| |||| ||| ||
Sbjct 19334658 GTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTTAGGGGGTGGGGGGGCGGG 19334599
Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| || ||||| ||| |||||| |||| | | | | ||||| || | |||||
Sbjct 19334598 GATGCCTTCCTTATCCTGGATCTTGGTCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 19334539
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||| |||||||| ||||| || | || || |||||||| |||||||||
Sbjct 19334538 CTCCAGGGTGATGGTCTTGCCAGTGGGGGTCTTCACAAAGATCTGCATTTTG 19334487
>seq27
Length=24139186
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || |||||||||||||| || || |||||| |||| || ||||| || || || ||
Sbjct 5858111 CTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGCCCGTCTTCCAGCTGTTTCCCAGCAAA 5858052
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||| | | |||||| || | || | || || |||||| |||||| ||||| |
Sbjct 5858051 GATCGATCTCTGCTGCTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGATGTT 5857992
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||| || | | || || | |||||||| ||||| ||||| || || |
Sbjct 5857991 TTCAATAATGTCACTGGGCTGGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCAT 5857932
Query 46582 AAAGATTTGCATT 46594
||||| ||| ||
Sbjct 5857931 GAAGATCTGCCTT 5857919
>seq2
Length=71252344
Score = 84.2 bits (92), Expect = 2e-11
Identities = 162/234 (69%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| || || | | ||| ||||| |||| | ||| || ||||| | |||||| ||
Sbjct 43675577 GCCACCCCTCAGATGCAGGACCAGGTGCAGGGGCAACTCTTTCTGGATGTCGTAGTCAGA 43675518
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485
||||| | | || | ||||||||||| || || || | | |||||| |||| ||
Sbjct 43675517 AGGAGTGTGGCCATCTTTCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGTTCGGTGGG 43675458
Query 46486 CACG-CTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC-GCCACCGTGTCGCTCGATTCC 46543
| | |||| ||| ||| ||||| ||| | | || | ||||| || | |||
Sbjct 43675457 GATGCCTCT-CTTATCCTGGATCTCAGCCTTCA-CATCTTAGATGGTGTCACTAGGCTCC 43675400
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| |||| |||||||| ||||| ||||| || || ||||| || |||||||||
Sbjct 43675399 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAATATCTGCATTTTG 43675346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565219422120720
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