Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq33 132 5e-26 seq71 125 8e-24 seq79 104 3e-17 seq11 102 9e-17 seq77 96.9 4e-15 seq9 96.9 4e-15 seq21 93.3 5e-14 seq19 91.5 2e-13 seq27 87.8 2e-12 seq2 84.2 2e-11 >seq33 Length=21137282 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||| | | || || ||||||||||| || || || | | ||||||||||| || Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| ||||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 15373526 >seq71 Length=11673789 Score = 125 bits (138), Expect = 8e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||||| ||||| | || || ||| || ||||| |||||||| | Sbjct 72300 GCCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTCAGG 72241 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | |||||||||| || Sbjct 72240 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTGGGG 72181 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| |||||| ||||| | | | ||||| || | ||||| Sbjct 72180 GATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTAGGCTCCAC 72121 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| ||||| || || |||||||| ||||||||| Sbjct 72120 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 72069 >seq79 Length=10412959 Score = 104 bits (114), Expect = 3e-17 Identities = 166/239 (69%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 108434 GCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 108375 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC------ 46479 |||||||| | || || ||||||||||| || || || | | |||||| || Sbjct 108374 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGAG 108315 Query 46480 -GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 || || | || ||||| ||| |||||| ||| | | | | ||||| || | Sbjct 108314 AGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGG 108255 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||| |||| |||||||| ||||| |||| || || ||||||| ||||||||| Sbjct 108254 GCTCCACTTCCAGGGTGATGGTCTTGCCGGTCATGGTCTTCGCAAAGATCTGCATTTTG 108196 >seq11 Length=43820709 Score = 102 bits (112), Expect = 9e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 46380 GCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGT 46439 ||| |||||| |||| || ||| || ||||| |||| ||| || || ||||| | | Sbjct 25320744 GCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGCGTGCGGCCAT 25320803 Query 46440 CGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 46499 | || ||||| |||||||| ||||||| ||||||||||| | || | | || ||||| Sbjct 25320804 CCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTTCTTGT 25320863 Query 46500 CCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGG 46559 | || || |||| || | | ||||| || | || || || | ||||||| Sbjct 25320864 CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 25320923 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| || || || || |||||||| ||||| Sbjct 25320924 TCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957 >seq77 Length=10698663 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || |||||||| | || || |||||||||||||| || || | | |||||||||| Sbjct 10127826 TCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCG 10127767 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540 | || | || ||||| ||| |||||| ||| | | | | ||||| || | Sbjct 10127766 GGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGC 10127707 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 10127706 TCCACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 10127654 >seq9 Length=44311105 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || ||| || ||||| ||||| || || | ||| | | Sbjct 19097341 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTGA--GCGTGAGGCCA 19097284 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| |||| ||| ||||||| ||||||||||| | || | | ||||||| Sbjct 19097283 TCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 19097224 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || || || |||| || | | ||||| || | || || || | |||||| Sbjct 19097223 TCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 19097164 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || |||||||| ||||| Sbjct 19097163 GTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129 >seq21 Length=27742158 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/255 (67%), Gaps = 23/255 (9%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| ||||| | ||||| ||||| |||| || ||| || ||||| ||||| || || Sbjct 616588 GCCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 616529 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG----- 46480 |||||||| || || || ||||||||||| || || || | | |||||||||| Sbjct 616528 AAGAGTGCGGTCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGCGGGG 616469 Query 46481 ------------------GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || || | || ||||| ||| |||||| ||||| | Sbjct 616468 GTGGGGTGGGGGGTGGGCGCGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTT 616409 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | ||||| | || |||||||| ||||| ||||| || || || Sbjct 616408 TCGATGGTGTCACTAGGCTCCACCTTCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 616349 Query 46583 AAGATTTGCATTTTG 46597 ||||| ||||||||| Sbjct 616348 AAGATCTGCATTTTG 616334 >seq19 Length=29834108 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/232 (68%), Gaps = 12/232 (5%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| | ||| |||| || ||| || ||||| |||||||| || ||||||| | Sbjct 19334718 ACGCAGGAGCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCTGCC 19334659 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT------------CGGCCGG 46485 ||| || ||||||||||| || || || | | ||| |||| ||| || Sbjct 19334658 GTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTTAGGGGGTGGGGGGGCGGG 19334599 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| |||||| |||| | | | | ||||| || | ||||| Sbjct 19334598 GATGCCTTCCTTATCCTGGATCTTGGTCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 19334539 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| || | || || |||||||| ||||||||| Sbjct 19334538 CTCCAGGGTGATGGTCTTGCCAGTGGGGGTCTTCACAAAGATCTGCATTTTG 19334487 >seq27 Length=24139186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||||||||| || || |||||| |||| || ||||| || || || || Sbjct 5858111 CTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGCCCGTCTTCCAGCTGTTTCCCAGCAAA 5858052 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||| | | |||||| || | || | || || |||||| |||||| ||||| | Sbjct 5858051 GATCGATCTCTGCTGCTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTTGCCTTGATGTT 5857992 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||| || | | || || | |||||||| ||||| ||||| || || | Sbjct 5857991 TTCAATAATGTCACTGGGCTGGACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCAT 5857932 Query 46582 AAAGATTTGCATT 46594 ||||| ||| || Sbjct 5857931 GAAGATCTGCCTT 5857919 >seq2 Length=71252344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | | ||| ||||| |||| | ||| || ||||| | |||||| || Sbjct 43675577 GCCACCCCTCAGATGCAGGACCAGGTGCAGGGGCAACTCTTTCTGGATGTCGTAGTCAGA 43675518 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||||| | | || | ||||||||||| || || || | | |||||| |||| || Sbjct 43675517 AGGAGTGTGGCCATCTTTCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGTTCGGTGGG 43675458 Query 46486 CACG-CTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC-GCCACCGTGTCGCTCGATTCC 46543 | | |||| ||| ||| ||||| ||| | | || | ||||| || | ||| Sbjct 43675457 GATGCCTCT-CTTATCCTGGATCTCAGCCTTCA-CATCTTAGATGGTGTCACTAGGCTCC 43675400 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||| |||||||| ||||| ||||| || || ||||| || ||||||||| Sbjct 43675399 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAATATCTGCATTTTG 43675346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565219422120720