Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq232 82.4 6e-11 >seq232 Length=582148 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 |||| || | ||||| || || ||| | ||||||| | ||| || | | |||| Sbjct 95581 CCTCGTGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTG 95640 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || ||||| ||||| ||||| || ||| | | || Sbjct 95641 CCCACTTCTGGAAGGTTCCATCCCCTGCTGGCCTGGTCTCCACAAGCTCCATGTCCTGAG 95700 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 95701 TTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 95760 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 95761 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 95790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 |||| || | ||||| || || ||||| ||||||| | ||| || | | |||| Sbjct 165172 CCTCGTGCTGCACATGGCACGTGTATTTCTGCTCTTCTCCAGAAGGCACCACCACAGCTG 165231 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 ||||||||||||| |||||||| || || || ||||| ||||| | ||| | | || Sbjct 165232 CCCACTTCTGAAAGGTTCCATCCCCTGCGGGCCTGGTCTCCACAAACTCCATGTCCTGAG 165291 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 165292 TTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 165351 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 165352 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 165381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397734179496816