Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq37 345 5e-90 seq5 163 3e-35 seq22 109 6e-19 seq132 102 9e-17 seq9 98.7 1e-15 >seq37 Length=19344684 Score = 345 bits (382), Expect = 5e-90 Identities = 550/784 (70%), Gaps = 14/784 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| || |||| | ||||||||||||| || || || ||| |||||||| Sbjct 211258 TTAGAAGTCAGCACCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 211315 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| | | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 211316 CTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCTTCCAGTGAAATATTC 211375 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||||||||| | ||| | | | | | || || | ||| | | Sbjct 211376 TCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTAAAACCCAGTTCCAGCATA 211435 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || ||||| | ||| ||| ||||| | | |||||||| || || | Sbjct 211436 AGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGC 211495 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908 || ||||| | || || ||||| || || ||||| || || || |||||| | || Sbjct 211496 TTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCA-CTGATAATTAT 211554 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||||| || || || || || | ||||| ||||||| || || || Sbjct 211555 TTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGAACATCAGGCAAGCGAA 211614 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| |||| ||||| ||||| | | | ||||||||||||||| | |||||||| Sbjct 211615 ATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTGAGGCCAGGCAT 211674 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 |||||||| ||| || | ||||||||| || ||||| || ||||||||||| || ||||| Sbjct 211675 CAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 211734 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 ||||| ||||| || | | ||| ||||| |||| || || | || ||| Sbjct 211735 CACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTTGTCCCCAACCCAGAG 211794 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| |||||||| || ||||| ||||| || || |||| ||| || ||| | Sbjct 211795 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCATTGAAGAGAAA 211854 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA----ACTGTACATTTCTG 19264 | || | | |||||| |||| | | ||||||| ||| || ||||| | Sbjct 211855 TTCCCTTTCGTTGGGATCTTT----TATGTAAGTGTCAATAAGGAGACTATATATTTCAG 211910 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 |||| || |||| || ||||| || || || || ||||| |||||||| ||||| | Sbjct 211911 AATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTCTGTGATCTGAA 211970 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 |||| | ||||| || ||||| |||||||| ||||| |||| ||| |||||||| | Sbjct 211971 CTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACTTGCTGCAAAGA 212030 Query 19385 ATGC 19388 | || Sbjct 212031 AAGC 212034 >seq5 Length=50794693 Score = 163 bits (180), Expect = 3e-35 Identities = 405/607 (67%), Gaps = 11/607 (2%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAG--TTCTTAGTTCTTC 48268 |||| || | |||| | ||||||||||| | ||| | || || | | || |||||| Sbjct 46265800 TCATGAAGAGATCTAGAATCCAAAGAGCAAAAAAGA--TCTCTGGCATGCT--GTTCTTT 46265745 Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 || || ||||| | || | |||| || || | || || ||| || || || | Sbjct 46265744 CTTTCCTATATTCTTCTTTAAATCAAACAATTCAAAGATGTCTAAATGTCAAGGCTCCAG 46265685 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 || || || | | | || || | || || || ||| |||| | ||||| || || || Sbjct 46265684 GTAAATAGCAAATGCTCCAGGACCCTTGTTCCCACCTCGATCCAGATATCAAGCTGTGTT 46265625 Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 |||||| ||||| | ||| | ||| ||||| || | || || | || ||| || Sbjct 46265624 GTTATATACTCTCAGCATCAGTGCAAGGCCATTGGAATTGCCCTTAGACCCATCAATGTA 46265565 Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 || ||| |||| | ||| ||| | | || ||| || || || || |||||| || Sbjct 46265564 GCTGCCAGTAGCCCAAATACAACTCAAAGCAACACCAATTCCTCCAGCAGATTTAGAAAT 46265505 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 | ||||| | || || || |||||||| ||||| || || || ||| |||| | | Sbjct 46265504 CAACGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCGTCTTTCATGCTCAG 46265445 Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628 |||||||| ||||| | ||| || || || || | | | || || ||||| || || Sbjct 46265444 AAGAAAACAGCTAGAAAGTTGTGGGTGGTTGGTACCAGCACTGAAGAAAGTTGGTGAAGC 46265385 Query 48629 ATGAATAAACCATTTCTCTG--ATAACAATTTATA-TGTTTCAATAACAGAATCTATATC 48685 |||| ||||||| |||| | | || | | | | ||||||||| | ||| ||||| Sbjct 46265384 ATGAGTAAACCACCTCTCAGGAAGAAGACTGTCTGCTGTTTCAATTGCTACATCAATATC 46265325 Query 48686 C-CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTT 48744 | ||| || || || | |||||| | ||| |||||||| || ||| ||||| | | || Sbjct 46265324 TTCTTTGTTG-ATCCCAACAGATACTCTCATCAACATATACTGTGGTATTTCAGCCACTT 46265266 Query 48745 TGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATG 48804 | ||| || ||||| | ||| || | | | ||||||||||| || ||||| | Sbjct 46265265 TTCCATTGATCTTCAACAAATAAGACAACTGTAGCATCTTAAAACCAAAGTAATTGTAAG 46265206 Query 48805 AAAAGTC 48811 | || || Sbjct 46265205 AGAAATC 46265199 >seq22 Length=27210278 Score = 109 bits (120), Expect = 6e-19 Identities = 113/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 23195308 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 23195365 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 23195366 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 23195425 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||| | ||| Sbjct 23195426 TCCATAAAGTCAAATGGATTCTCTAC 23195451 >seq132 Length=5918258 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || ||||| || ||| Sbjct 980250 TCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 980191 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| | |||||||| || || || || Sbjct 980190 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGGCC 980131 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 980130 ACCACTCTTTCCCC 980117 >seq9 Length=44311105 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| ||||| Sbjct 1878115 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATAGAC 1878174 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || |||||||| || ||||||||||| | |||| | ||| || Sbjct 1878175 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 1878234 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 1878235 TTTCTTATACCATA 1878248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562089927197040