Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq37 345 5e-90
seq5 163 3e-35
seq22 109 6e-19
seq132 102 9e-17
seq9 98.7 1e-15
>seq37
Length=19344684
Score = 345 bits (382), Expect = 5e-90
Identities = 550/784 (70%), Gaps = 14/784 (2%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| || |||| | ||||||||||||| || || || ||| ||||||||
Sbjct 211258 TTAGAAGTCAGCACCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 211315
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| | | ||||| || |||||||| ||||| ||||| || | ||| |||
Sbjct 211316 CTCTGATACTTACCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCTTCCAGTGAAATATTC 211375
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| ||||||||||| | ||| | | | | | || || | ||| | |
Sbjct 211376 TCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCCTGCTAAAACCCAGTTCCAGCATA 211435
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||||| || || ||||| | ||| ||| ||||| | | |||||||| || || |
Sbjct 211436 AGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGC 211495
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908
|| ||||| | || || ||||| || || ||||| || || || |||||| | ||
Sbjct 211496 TTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCA-CTGATAATTAT 211554
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968
| ||||| || || || || || | ||||| ||||||| || || ||
Sbjct 211555 TTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGAACATCAGGCAAGCGAA 211614
Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028
|||||| |||| ||||| ||||| | | | ||||||||||||||| | ||||||||
Sbjct 211615 ATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTGAGGCCAGGCAT 211674
Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088
|||||||| ||| || | ||||||||| || ||||| || ||||||||||| || |||||
Sbjct 211675 CAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 211734
Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148
||||| ||||| || | | ||| ||||| |||| || || | || |||
Sbjct 211735 CACTGCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTTGTCCCCAACCCAGAG 211794
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| |||||||| |||||||| || ||||| ||||| || || |||| ||| || ||| |
Sbjct 211795 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCATTGAAGAGAAA 211854
Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA----ACTGTACATTTCTG 19264
| || | | |||||| |||| | | ||||||| ||| || ||||| |
Sbjct 211855 TTCCCTTTCGTTGGGATCTTT----TATGTAAGTGTCAATAAGGAGACTATATATTTCAG 211910
Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324
|||| || |||| || ||||| || || || || ||||| |||||||| ||||| |
Sbjct 211911 AATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTCTGTGATCTGAA 211970
Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384
|||| | ||||| || ||||| |||||||| ||||| |||| ||| |||||||| |
Sbjct 211971 CTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACTTGCTGCAAAGA 212030
Query 19385 ATGC 19388
| ||
Sbjct 212031 AAGC 212034
>seq5
Length=50794693
Score = 163 bits (180), Expect = 3e-35
Identities = 405/607 (67%), Gaps = 11/607 (2%)
Strand=Plus/Minus
Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAG--TTCTTAGTTCTTC 48268
|||| || | |||| | ||||||||||| | ||| | || || | | || ||||||
Sbjct 46265800 TCATGAAGAGATCTAGAATCCAAAGAGCAAAAAAGA--TCTCTGGCATGCT--GTTCTTT 46265745
Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328
|| || ||||| | || | |||| || || | || || ||| || || || |
Sbjct 46265744 CTTTCCTATATTCTTCTTTAAATCAAACAATTCAAAGATGTCTAAATGTCAAGGCTCCAG 46265685
Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388
|| || || | | | || || | || || || ||| |||| | ||||| || || ||
Sbjct 46265684 GTAAATAGCAAATGCTCCAGGACCCTTGTTCCCACCTCGATCCAGATATCAAGCTGTGTT 46265625
Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448
|||||| ||||| | ||| | ||| ||||| || | || || | || ||| ||
Sbjct 46265624 GTTATATACTCTCAGCATCAGTGCAAGGCCATTGGAATTGCCCTTAGACCCATCAATGTA 46265565
Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508
|| ||| |||| | ||| ||| | | || ||| || || || || |||||| ||
Sbjct 46265564 GCTGCCAGTAGCCCAAATACAACTCAAAGCAACACCAATTCCTCCAGCAGATTTAGAAAT 46265505
Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568
| ||||| | || || || |||||||| ||||| || || || ||| |||| | |
Sbjct 46265504 CAACGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCGTCTTTCATGCTCAG 46265445
Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628
|||||||| ||||| | ||| || || || || | | | || || ||||| || ||
Sbjct 46265444 AAGAAAACAGCTAGAAAGTTGTGGGTGGTTGGTACCAGCACTGAAGAAAGTTGGTGAAGC 46265385
Query 48629 ATGAATAAACCATTTCTCTG--ATAACAATTTATA-TGTTTCAATAACAGAATCTATATC 48685
|||| ||||||| |||| | | || | | | | ||||||||| | ||| |||||
Sbjct 46265384 ATGAGTAAACCACCTCTCAGGAAGAAGACTGTCTGCTGTTTCAATTGCTACATCAATATC 46265325
Query 48686 C-CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTT 48744
| ||| || || || | |||||| | ||| |||||||| || ||| ||||| | | ||
Sbjct 46265324 TTCTTTGTTG-ATCCCAACAGATACTCTCATCAACATATACTGTGGTATTTCAGCCACTT 46265266
Query 48745 TGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATG 48804
| ||| || ||||| | ||| || | | | ||||||||||| || ||||| |
Sbjct 46265265 TTCCATTGATCTTCAACAAATAAGACAACTGTAGCATCTTAAAACCAAAGTAATTGTAAG 46265206
Query 48805 AAAAGTC 48811
| || ||
Sbjct 46265205 AGAAATC 46265199
>seq22
Length=27210278
Score = 109 bits (120), Expect = 6e-19
Identities = 113/146 (77%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || || ||| ||||||||
Sbjct 23195308 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 23195365
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| |||
Sbjct 23195366 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 23195425
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||| | |||
Sbjct 23195426 TCCATAAAGTCAAATGGATTCTCTAC 23195451
>seq132
Length=5918258
Score = 102 bits (112), Expect = 9e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | || ||||| || ||||| || |||
Sbjct 980250 TCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 980191
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| | |||||||| || || || ||
Sbjct 980190 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGGCC 980131
Query 19105 ACTAGTCTTTCTCC 19118
|| | |||||| ||
Sbjct 980130 ACCACTCTTTCCCC 980117
>seq9
Length=44311105
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || |||| || || || || || ||||| |||||
Sbjct 1878115 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATAGAC 1878174
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || | || |||||||| || ||||||||||| | |||| | ||| ||
Sbjct 1878175 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 1878234
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 1878235 TTTCTTATACCATA 1878248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562089927197040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |