Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq95 127 3e-24 >seq95 Length=8788572 Score = 127 bits (140), Expect = 3e-24 Identities = 175/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 209129 TCATCAAACACCTGTAGTCTGATTTTCCAGTCCTGCTCAAACATGGTATCTTTTAAAACC 209188 ||| | |||||||| || |||| ||||| || |||||||||| ||| || || || ||| Sbjct 8091985 TCACCGAACACCTGCAGCCTGACCTTCCATTCTTGCTCAAACAAGGTCTCCTTCAACACC 8092044 Query 209189 CTCATAATATATATGTTAGCATCCTCTTTTTGAACGCGAGACAAATATAACGCACCGGAC 209248 ||||| || || ||||| |||||||| || | || ||| | || | ||||| | Sbjct 8092045 CTCATGATGTAGATGTTGGCATCCTCCTTCTCGACCTTAGATATGTACAGTGCACCACTC 8092104 Query 209249 TGGGAATCCAATCGAACTCGCCCTTTGAATTTATTGTCAAAATATTTTAAGCGTTTTACA 209308 || ||||| | || || | ||||| |||||||| ||| | || | | | | | ||| Sbjct 8092105 TGAGAATCGAGTCTGACCCTGCCTTTAAATTTATTTTCATAGTACCTAAGTCTTCTGACA 8092164 Query 209309 TCCCAATCCGCTATCTTTTGATCATAGGTACAAAACCATGTAATCTCTCTAACATTTTCA 209368 ||||| || || ||||| | ||||| ||||||||||| || || || || || ||| Sbjct 8092165 TCCCAGTCTGCAATCTTCAGGTCATAAGTACAAAACCAAGTTATTCCTTGGACGTTCTCA 8092224 Query 209369 GGAAG 209373 || || Sbjct 8092225 GGTAG 8092229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702165224011040