Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq37 242 4e-59 seq111 123 3e-23 seq132 102 1e-16 seq22 86.0 7e-12 >seq37 Length=19344684 Score = 242 bits (268), Expect = 4e-59 Identities = 518/764 (68%), Gaps = 16/764 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| | || |||| |||| || || || || || ||||||| Sbjct 211303 CATCACTCCCATCCTCTGATACTTACCTACTC-TCTTCTCAAAGAAGTTAGTGTTTCCTT 211361 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 211362 CCAGTGAAATATTCTCCATAAAGTCAAATGGATTC--TCTACTCTGAAAACCCTGCTAAA 211419 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | |||| || ||| || || || ||||| || ||||||| |||||| | Sbjct 211420 ACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCA 211479 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||| || || || || | || || ||| || | ||| || || Sbjct 211480 ATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAAC 211539 Query 37109 AGCATCTTTAACTATATTAACAATAACT---TCTTCAGTTGGGGGATATTTTAAATATTT 37165 |||| ||| ||| | | | ||| || || | ||| | | | | ||| Sbjct 211540 AGCACTGATAATTATTT---CTCTTACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTT 211596 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | || || |||||||| |||||||| |||||||| | | | ||||||||| Sbjct 211597 GAACATCAGGCAAGCGAAATCACAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGA 211656 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| || Sbjct 211657 AAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACC 211716 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTAC-CGAAAGTTGAAC 37344 ||||||||| || ||||| ||||| ||||| ||| ||| ||||| | | | || | | Sbjct 211717 AGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTGCAA--CGTGTTCACCATAGGTAGCC 211774 Query 37345 TATAA-TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTT 37403 | | || || ||| | |||||||||||| || ||||| || ||| Sbjct 211775 TCTTTGTCCCCAACCCAGAGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT 211834 Query 37404 TCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGT 37463 ||||| || || |||||||| | |||| | |||| |||| ||||| ||||| || Sbjct 211835 TCAATAGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGG 211894 Query 37464 AAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTA 37523 | |||||| |||||||| || || |||| || || || || || ||||| ||||| Sbjct 211895 AGACTATATATTTCAGAATGTATGTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGG 211954 Query 37524 GCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 ||||| | | ||||| || | ||| | || | ||||||||||| ||||| ||| Sbjct 211955 GCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCA 212014 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCT 37627 | ||| |||||||||||||| ||||| | |||||| | ||| Sbjct 212015 TAACTTGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCT 212058 >seq111 Length=7367144 Score = 123 bits (136), Expect = 3e-23 Identities = 308/463 (67%), Gaps = 15/463 (3%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATG--------TAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 || ||||| |||||||| |||||| ||||| || || || | |||||| |||| Sbjct 4918118 CAAGCAAAGTCACAATGTAAACTGTTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 4918177 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 | || | || | ||| | | | ||| || | ||| ||||||| ||||||||| |||| Sbjct 4918178 ATGTGAGGCCAGACATCAGTCATTGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 4918237 Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTG-AACTA 37346 || |||| | ||||| |||| ||||| ||| ||| |||| | | || | | || Sbjct 4918238 AAGAGAAGGTGCCTTCTACTGTGGCAAAGGCTGCAACACGTTCTCTGTGGGTAGCATCTT 4918297 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | ||| |||||| | ||||||||||| || ||||| || |||| Sbjct 4918298 TGTTCA-CAATCCAACACAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATCCTTTCG 4918356 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || || |||||||| | |||||| | ||| ||| | | || ||| | | | | Sbjct 4918357 ATGGCGTTGAAGAGAAATTCCCTTTCTTTGTTGTCT-TTA-ACATGTGTCAGTAAAGAGA 4918414 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 ||| ||| ||||| | || ||||| ||||| || || || ||||| || || | | Sbjct 4918415 TTATCCATGTCAGAATATATGTTTTCCATAGCAATTTGGAAGCCATAGAAGCA---GGTT 4918471 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 || | |||||| || | | | | || | ||||||| || |||||| ||| Sbjct 4918472 TCTGTAGCTTGAACTTCTTGGACACATTGCTCCACCAAGTTTTTATCAACTATGCCACGG 4918531 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTT 37629 | ||||||||||||| |||| || |||||||| ||||| Sbjct 4918532 CATGCTGCAAAGAAAGTCAGAATATGGGATATAAAATATCTTT 4918574 >seq132 Length=5918258 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 980252 CTTCATCTCTGCTGATAAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 980193 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || || || | Sbjct 980192 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 980133 Query 37318 CTAC 37321 | || Sbjct 980132 CCAC 980129 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 36888 TGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCC 36947 ||||| ||| ||||||| | || || |||||||| ||||||||||| || || |||||| Sbjct 989917 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAGAGAAATGTTTTCC 989858 Query 36948 ATAAAATCAAATGGATT 36964 ||||||||||| ||||| Sbjct 989857 ATAAAATCAAAAGGATT 989841 >seq22 Length=27210278 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 23195353 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 23195411 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 23195412 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 23195445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592296912963440