Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq22 147 2e-30
seq12 129 5e-25
seq47 127 2e-24
seq126 122 7e-23
seq30 104 2e-17
seq2 84.2 2e-11
>seq22
Length=27210278
Score = 147 bits (162), Expect = 2e-30
Identities = 194/268 (72%), Gaps = 1/268 (0%)
Strand=Plus/Plus
Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824
||||||||| |||| | || | || |||||| | ||||| || || | ||||| |||||
Sbjct 26912560 TGGGAAAGG-TCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 26912618
Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
| | || || ||||||| | || ||||| || || || | || || |||| |||
Sbjct 26912619 AAATATGTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCA 26912678
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
|||||||||||||| || | |||||||| |||||| || || | || || |||| ||
Sbjct 26912679 TGATCATGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGT 26912738
Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004
| | || |||||||| |||||||| || ||||| | || |||||| ||||| || |
Sbjct 26912739 CTCTTGATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGA 26912798
Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAG 30032
|| ||||| || || | ||||| ||
Sbjct 26912799 GGGCATGGCATGGGGGCAACGCCATCAG 26912826
>seq12
Length=39782659
Score = 129 bits (142), Expect = 5e-25
Identities = 127/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||
Sbjct 25689306 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 25689247
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| || || ||||| || ||||| || || ||||| |||| |
Sbjct 25689246 ACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 25689187
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| || | || ||||| ||||| || ||||| ||
Sbjct 25689186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 25689143
Score = 105 bits (116), Expect = 5e-18
Identities = 128/173 (74%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| ||||| || ||||| ||||||||||| || || || || |||| |||
Sbjct 25685097 CATATCTCTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 25685038
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| ||||| ||| ||| ||| | |||| |||||||| ||| || ||||| ||
Sbjct 25685037 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 25684978
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322
|||||| || || ||||| || |||||||| | |||||||| || ||||
Sbjct 25684977 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 25684926
>seq47
Length=17121399
Score = 127 bits (140), Expect = 2e-24
Identities = 192/268 (72%), Gaps = 10/268 (4%)
Strand=Plus/Minus
Query 112072 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 112131
||||| ||||||||| || || || || || ||||||||||| ||||| || ||
Sbjct 7276482 GCCAGAAAATGAGCTCCTTGTGGAGGCTCCTTGAGTTCCCTGCTGAGAACTACATTAATT 7276423
Query 112132 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 112191
|| || || | ||||| |||||| || || ||||||||||| ||||| |||||||| |||
Sbjct 7276422 CTATCCCTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATGATC 7276363
Query 112192 ACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAA 112250
|||| ||||| || || |||||||| || | |||| | ||| | || || | ||
Sbjct 7276362 ACCAAATTCTGTTTATCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATGCCTGAA 7276304
Query 112251 ATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-T 112309
|| || || || |||| ||||| || ||||| || ||| |||||||| |
Sbjct 7276303 TTCATT------CCTGAACGGCGGCCAGGGCAGGTCACCGTTCTTGCCGGTGCCCATGTT 7276250
Query 112310 CTGGACACACGGCCACGATACCGTTCAG 112337
|||| |||| || ||||| | ||| ||
Sbjct 7276249 CTGG-GACACAGCGACGATGCAGTTTAG 7276223
>seq126
Length=6219632
Score = 122 bits (134), Expect = 7e-23
Identities = 170/232 (73%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 112108 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 112167
||||||||||| ||||| || || || || | | ||||| |||||| || || ||||||
Sbjct 45164 TCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 45105
Query 112168 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCG 112227
||||| ||||| |||||||| |||||||| ||||| || || |||||||| || | |
Sbjct 45104 AACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTATCTTCTACTGAAGAGGTTGTG 45045
Query 112228 GTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATC 112286
||| | ||| | || || | || || || | | ||| | |||| ||||| ||
Sbjct 45044 GTC-ATTCTCTGGAAATGCCTGAATTCGTTCCTGA-----GCA-GCGGCCAGGGCAGGTC 44992
Query 112287 TCCGTTGTTCCCGATGCCCATG-TCTGGACACACGGCCACGATACCGTTCAG 112337
||||| || |||||||||||| ||||| |||| | ||||| | ||| ||
Sbjct 44991 ACCGTTCTTGCCGATGCCCATGTTCTGG-GACACAACAACGATGCAGTTTAG 44941
>seq30
Length=22521080
Score = 104 bits (114), Expect = 2e-17
Identities = 182/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || |||||||| || | || || || || |
Sbjct 9522977 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACCAAATTAATTCTATCCTT 9523036
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || || ||||||||||| |||| ||||||||| ||||||| ||
Sbjct 9523037 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTGTCTACCCATAATCACCAGATT 9523096
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258
||| || ||| | |||||| || | ||| | ||| | || | | || || || |
Sbjct 9523097 CTGTTTACCTTCTATTGAAGAAGTTGTAGTC-ATTCTCTGGAAATACCTGAATTCATTTC 9523155
Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317
||| || |||| ||||| || || || || ||||| |||||| ||||| ||
Sbjct 9523156 TGAGT------GGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTCTGG-GAC 9523208
Query 112318 ACGGCCACGATACCGTTCAG 112337
|| || ||||| | ||| ||
Sbjct 9523209 ACAGCGACGATGCAGTTTAG 9523228
>seq2
Length=71252344
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || ||| ||||||| ||||| || || || || | | |||| |||||| || ||
Sbjct 59356448 TTGAGTTCCTTGCTGAGAACTACATTAATTCTATCCTTTAAGGGTCGATTCTTCTCAGGA 59356389
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 112205
||||||||||| ||||| |||||||| ||||||| ||||| ||
Sbjct 59356388 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTT 59356345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408604223647478
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |