Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq22 147 2e-30 seq12 129 5e-25 seq47 127 2e-24 seq126 122 7e-23 seq30 104 2e-17 seq2 84.2 2e-11 >seq22 Length=27210278 Score = 147 bits (162), Expect = 2e-30 Identities = 194/268 (72%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| |||| | || | || |||||| | ||||| || || | ||||| ||||| Sbjct 26912560 TGGGAAAGG-TCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 26912618 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | || || ||||||| | || ||||| || || || | || || |||| ||| Sbjct 26912619 AAATATGTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCA 26912678 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 |||||||||||||| || | |||||||| |||||| || || | || || |||| || Sbjct 26912679 TGATCATGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGT 26912738 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 | | || |||||||| |||||||| || ||||| | || |||||| ||||| || | Sbjct 26912739 CTCTTGATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGA 26912798 Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || ||||| || || | ||||| || Sbjct 26912799 GGGCATGGCATGGGGGCAACGCCATCAG 26912826 >seq12 Length=39782659 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 25689306 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 25689247 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || || ||||| || ||||| || || ||||| |||| | Sbjct 25689246 ACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 25689187 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 25689186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 25689143 Score = 105 bits (116), Expect = 5e-18 Identities = 128/173 (74%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||| ||||||||||| || || || || |||| ||| Sbjct 25685097 CATATCTCTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 25685038 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| | |||| |||||||| ||| || ||||| || Sbjct 25685037 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 25684978 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 |||||| || || ||||| || |||||||| | |||||||| || |||| Sbjct 25684977 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 25684926 >seq47 Length=17121399 Score = 127 bits (140), Expect = 2e-24 Identities = 192/268 (72%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 112072 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 112131 ||||| ||||||||| || || || || || ||||||||||| ||||| || || Sbjct 7276482 GCCAGAAAATGAGCTCCTTGTGGAGGCTCCTTGAGTTCCCTGCTGAGAACTACATTAATT 7276423 Query 112132 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 112191 || || || | ||||| |||||| || || ||||||||||| ||||| |||||||| ||| Sbjct 7276422 CTATCCCTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATGATC 7276363 Query 112192 ACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAA 112250 |||| ||||| || || |||||||| || | |||| | ||| | || || | || Sbjct 7276362 ACCAAATTCTGTTTATCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATGCCTGAA 7276304 Query 112251 ATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-T 112309 || || || || |||| ||||| || ||||| || ||| |||||||| | Sbjct 7276303 TTCATT------CCTGAACGGCGGCCAGGGCAGGTCACCGTTCTTGCCGGTGCCCATGTT 7276250 Query 112310 CTGGACACACGGCCACGATACCGTTCAG 112337 |||| |||| || ||||| | ||| || Sbjct 7276249 CTGG-GACACAGCGACGATGCAGTTTAG 7276223 >seq126 Length=6219632 Score = 122 bits (134), Expect = 7e-23 Identities = 170/232 (73%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 112108 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 112167 ||||||||||| ||||| || || || || | | ||||| |||||| || || |||||| Sbjct 45164 TCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 45105 Query 112168 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCG 112227 ||||| ||||| |||||||| |||||||| ||||| || || |||||||| || | | Sbjct 45104 AACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTATCTTCTACTGAAGAGGTTGTG 45045 Query 112228 GTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATC 112286 ||| | ||| | || || | || || || | | ||| | |||| ||||| || Sbjct 45044 GTC-ATTCTCTGGAAATGCCTGAATTCGTTCCTGA-----GCA-GCGGCCAGGGCAGGTC 44992 Query 112287 TCCGTTGTTCCCGATGCCCATG-TCTGGACACACGGCCACGATACCGTTCAG 112337 ||||| || |||||||||||| ||||| |||| | ||||| | ||| || Sbjct 44991 ACCGTTCTTGCCGATGCCCATGTTCTGG-GACACAACAACGATGCAGTTTAG 44941 >seq30 Length=22521080 Score = 104 bits (114), Expect = 2e-17 Identities = 182/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| || | || || || || | Sbjct 9522977 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACCAAATTAATTCTATCCTT 9523036 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| |||| ||||||||| ||||||| || Sbjct 9523037 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTGTCTACCCATAATCACCAGATT 9523096 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| | |||||| || | ||| | ||| | || | | || || || | Sbjct 9523097 CTGTTTACCTTCTATTGAAGAAGTTGTAGTC-ATTCTCTGGAAATACCTGAATTCATTTC 9523155 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 ||| || |||| ||||| || || || || ||||| |||||| ||||| || Sbjct 9523156 TGAGT------GGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTCTGG-GAC 9523208 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 9523209 ACAGCGACGATGCAGTTTAG 9523228 >seq2 Length=71252344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || ||| ||||||| ||||| || || || || | | |||| |||||| || || Sbjct 59356448 TTGAGTTCCTTGCTGAGAACTACATTAATTCTATCCTTTAAGGGTCGATTCTTCTCAGGA 59356389 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 112205 ||||||||||| ||||| |||||||| ||||||| ||||| || Sbjct 59356388 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTT 59356345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408604223647478