Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_017979.1
Length=43376
Score E
Sequences producing significant alignments: (Bits) Value
seq1056 93.3 1e-14
seq3 89.7 1e-13
>seq1056
Length=1934
Score = 93.3 bits (102), Expect = 1e-14
Identities = 186/273 (68%), Gaps = 7/273 (3%)
Strand=Plus/Minus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| ||||||| ||| ||||||| |||| || || || || || | |
Sbjct 950 TTCCTTCTGGGTGTTATGAAAGAGTAGCTCCACGGTCTGGCTTGGCTGCAAAACACTTTA 891
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
||||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | |
Sbjct 890 TTGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 831
Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134
||||||| || || ||| ||| | | || | | ||| | ||||| ||| | |
Sbjct 830 ATAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAAAGGGATCGAATTGCACAGCTCA 774
Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAA 1194
|||||||| | | ||| ||| || || ||| | | || || || | ||||
Sbjct 773 TTTGTGAACGGATTTTTTACCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAA 714
Query 1195 GGGGTTCTGCAGGATTTGGGTCTAC-CGGAAGA 1226
||||||| | ||| ||||| || || ||||||
Sbjct 713 GGGGTTCAGGAGGTTTTGGTTCCACTGGGAAGA 681
>seq3
Length=58292249
Score = 89.7 bits (98), Expect = 1e-13
Identities = 185/273 (68%), Gaps = 7/273 (3%)
Strand=Plus/Minus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| ||||| || ||| |||||||| |||| || || || | || | |
Sbjct 29419298 TTCCTTCTGGGTGTTACGGAAGAGTAGCTCCTCGGTCTGGCTTGGCTGAAAAACACTTTA 29419239
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
||||||| || |||||||| || ||| ||| | ||| || ||||||||||||| | |
Sbjct 29419238 TTGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAACGTTGGTGTTGCACTGT 29419179
Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134
|||||||| || || ||| ||| | | || || |||| | ||||| || | |
Sbjct 29419178 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAAGATGATCGAATTGCACAACTCA 29419122
Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAA 1194
|||||||| | | ||| ||| || || ||| | | || | || | ||||
Sbjct 29419121 TTTGTGAACGGATTTTTTACCCAGAAATAGAAGAAGTTCAAGCTTTGGTTGACACCGAAA 29419062
Query 1195 GGGGTTCTGCAGGATTTGGGTCTAC-CGGAAGA 1226
||||||| | ||| ||| | || || ||||||
Sbjct 29419061 GGGGTTCAGGAGGTTTTAGTTCCACTGGGAAGA 29419029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138677176577016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |