Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq1056 93.3 1e-14 seq3 89.7 1e-13 >seq1056 Length=1934 Score = 93.3 bits (102), Expect = 1e-14 Identities = 186/273 (68%), Gaps = 7/273 (3%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| ||||||| ||| ||||||| |||| || || || || || | | Sbjct 950 TTCCTTCTGGGTGTTATGAAAGAGTAGCTCCACGGTCTGGCTTGGCTGCAAAACACTTTA 891 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 ||||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 890 TTGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 831 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 ||||||| || || ||| ||| | | || | | ||| | ||||| ||| | | Sbjct 830 ATAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAAAGGGATCGAATTGCACAGCTCA 774 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAA 1194 |||||||| | | ||| ||| || || ||| | | || || || | |||| Sbjct 773 TTTGTGAACGGATTTTTTACCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAA 714 Query 1195 GGGGTTCTGCAGGATTTGGGTCTAC-CGGAAGA 1226 ||||||| | ||| ||||| || || |||||| Sbjct 713 GGGGTTCAGGAGGTTTTGGTTCCACTGGGAAGA 681 >seq3 Length=58292249 Score = 89.7 bits (98), Expect = 1e-13 Identities = 185/273 (68%), Gaps = 7/273 (3%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| ||||| || ||| |||||||| |||| || || || | || | | Sbjct 29419298 TTCCTTCTGGGTGTTACGGAAGAGTAGCTCCTCGGTCTGGCTTGGCTGAAAAACACTTTA 29419239 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 ||||||| || |||||||| || ||| ||| | ||| || ||||||||||||| | | Sbjct 29419238 TTGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAACGTTGGTGTTGCACTGT 29419179 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || || |||| | ||||| || | | Sbjct 29419178 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAAGATGATCGAATTGCACAACTCA 29419122 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAA 1194 |||||||| | | ||| ||| || || ||| | | || | || | |||| Sbjct 29419121 TTTGTGAACGGATTTTTTACCCAGAAATAGAAGAAGTTCAAGCTTTGGTTGACACCGAAA 29419062 Query 1195 GGGGTTCTGCAGGATTTGGGTCTAC-CGGAAGA 1226 ||||||| | ||| ||| | || || |||||| Sbjct 29419061 GGGGTTCAGGAGGTTTTAGTTCCACTGGGAAGA 29419029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138677176577016