Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq54 109 4e-19 seq88 102 6e-17 seq79 102 6e-17 seq11 100 2e-16 seq9 95.1 1e-14 seq97 84.2 2e-11 >seq54 Length=16265076 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| ||||| || || || || ||||| || | | | | | |||| Sbjct 5607014 AACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAATACATCCATCT 5607073 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||| || ||||| |||| | || ||||| || ||||||||||| ||||| Sbjct 5607074 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATGCCTTCCTTATCC 5607133 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || |||||| ||||| ||| || || | ||| | || || |||| || Sbjct 5607134 TGAATCTTGGCCTTTACATTTTCTGTAGTATCCGAGGGTTCAGCCTCGAGGGTGATGGTC 5607193 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGC 101467 || || || | ||||| ||||| |||||| Sbjct 5607194 TTCCCTGTAAGGGTTTTCACAAAAATCTGC 5607223 >seq88 Length=9397244 Score = 102 bits (112), Expect = 6e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | || || | | |||| |||| || Sbjct 1074145 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTGCGGCCATCCTCCAGCTGT 1074204 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| |||||||||| | |||| ||||| | || || || || || ||||||||||| Sbjct 1074205 TTACCAGCAAATATCAGAGGCTGCTGATCAGATGGGATACCCTCCTTGTCTTGAATTTTG 1074264 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | || || | ||| |||| || ||||| || Sbjct 1074265 GCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTTAAGGGTGATGGTCTTGCCCGTG 1074324 Query 101447 AAAGTTTTTACAAATATCTGC 101467 | || || ||||| |||||| Sbjct 1074325 AGGGTCTTCACAAAGATCTGC 1074345 >seq79 Length=10412959 Score = 102 bits (112), Expect = 6e-17 Identities = 148/210 (70%), Gaps = 7/210 (3%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | ||| | | |||| |||| ||| Sbjct 108409 TGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 108350 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGC-------GGAATGCCTTCTTTATCTTG 101379 || |||||||| || | | ||| |||||||| ||||||||||| ||||| || Sbjct 108349 TTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGAGAGGGGGGAATGCCTTCCTTATCCTG 108290 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || ||| |||| | |||||| | |||||||| || |||| || || Sbjct 108289 GATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTT 108230 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | || || |||| |||||||| Sbjct 108229 GCCGGTCATGGTCTTCGCAAAGATCTGCAT 108200 >seq11 Length=43820709 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||| || | || || | | |||| |||| || Sbjct 25320755 TGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGCGTGCGGCCATCCTCCAGCTGT 25320814 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||||||||| |||||| || || || || || || | || ||||||||||| Sbjct 25320815 TTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTTCTTGTCTTGAATTTTG 25320874 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | || || ||||| |||| || ||||| || Sbjct 25320875 GCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTG 25320934 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 25320935 AGGGTCTTCACAAAGATCTGCAT 25320957 >seq9 Length=44311105 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| || ||||| || ||||| || || ||||| || | || || | | |||| ||| Sbjct 3708428 ACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCCGCCATCCTCC 3708369 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || ||||| |||||||||| || ||| || || || || || || || || |||||| Sbjct 3708368 AGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 3708309 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTG---TCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| ||| ||| |||| ||||| ||| | || || ||||| |||| || Sbjct 3708308 ATTTTGGCTTTGACA--TTCT-CAGTGGTATCACTGGGCTCGACCTCAAGGGTGATGGTC 3708252 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || | || || ||||| ||||| || Sbjct 3708251 CTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | || | |||| |||| || Sbjct 19097329 TGCAGGGTGGACTCTTTCTGGATGTTGTATTCTGAGC--GTGAGGCCATCCTCCAGCTGT 19097272 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || | |||||||||| |||||| || || || || || || || || ||||||||||| Sbjct 19097271 TTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 19097212 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | || || ||||| |||| || ||||| || Sbjct 19097211 GCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTG 19097152 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 19097151 AGGGTCTTCACAAAGATCTGCAT 19097129 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | || | | |||| |||| || Sbjct 14505847 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGC--GTGCGGCCATCCTCCAGCTGT 14505790 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||||||||| || ||| || || | || || ||||| || ||||||||||| Sbjct 14505789 TTGCCGGCAAATATCAGACACTGCTGGTCAAGTGGGATACCTTCCTTGTCTTGAATTTTG 14505730 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || |||||| | || || ||||| |||| || ||||| || Sbjct 14505729 GCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTG 14505670 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 14505669 AGGGTCTTCACAAAGATCTGCAT 14505647 >seq97 Length=8594300 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||| | || | || ||| | | ||| |||| || Sbjct 7807789 TGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCAGCCATGCTCCAGCTGT 7807730 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || | ||||| |||| || ||| || || || | || || || || ||||||||||| Sbjct 7807729 TTGCTGGCAAACATCAGACACTGCTGGTCAGGTAGGATACCCTCCTTGTCTTGAATTTTG 7807670 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| || || || ||||| |||| || ||||| || Sbjct 7807669 GCTTTGACATTCTCAATGGTGTCACCAGTCTCGACCTCAAGGGTGATGGTCTTGCCCGTG 7807610 Query 101447 AAAGTTTTTACAAATATCT 101465 | ||| || || || |||| Sbjct 7807609 AGAGTCTTCACTAAGATCT 7807591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396265427578902