Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq54 109 4e-19
seq88 102 6e-17
seq79 102 6e-17
seq11 100 2e-16
seq9 95.1 1e-14
seq97 84.2 2e-11
>seq54
Length=16265076
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || | |||||| ||||| || || || || ||||| || | | | | | ||||
Sbjct 5607014 AACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAATACATCCATCT 5607073
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|||| |||||| || ||||| |||| | || ||||| || ||||||||||| |||||
Sbjct 5607074 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATGCCTTCCTTATCC 5607133
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
||||| || |||||| ||||| ||| || || | ||| | || || |||| ||
Sbjct 5607134 TGAATCTTGGCCTTTACATTTTCTGTAGTATCCGAGGGTTCAGCCTCGAGGGTGATGGTC 5607193
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGC 101467
|| || || | ||||| ||||| ||||||
Sbjct 5607194 TTCCCTGTAAGGGTTTTCACAAAAATCTGC 5607223
>seq88
Length=9397244
Score = 102 bits (112), Expect = 6e-17
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || ||||| || | || || | | |||| |||| ||
Sbjct 1074145 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTGCGGCCATCCTCCAGCTGT 1074204
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| |||||||||| | |||| ||||| | || || || || || |||||||||||
Sbjct 1074205 TTACCAGCAAATATCAGAGGCTGCTGATCAGATGGGATACCCTCCTTGTCTTGAATTTTG 1074264
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | |||||| | || || | ||| |||| || ||||| ||
Sbjct 1074265 GCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTTAAGGGTGATGGTCTTGCCCGTG 1074324
Query 101447 AAAGTTTTTACAAATATCTGC 101467
| || || ||||| ||||||
Sbjct 1074325 AGGGTCTTCACAAAGATCTGC 1074345
>seq79
Length=10412959
Score = 102 bits (112), Expect = 6e-17
Identities = 148/210 (70%), Gaps = 7/210 (3%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || ||||| || | | ||| | | |||| |||| |||
Sbjct 108409 TGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 108350
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGC-------GGAATGCCTTCTTTATCTTG 101379
|| |||||||| || | | ||| |||||||| ||||||||||| ||||| ||
Sbjct 108349 TTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGAGAGGGGGGAATGCCTTCCTTATCCTG 108290
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
|| || || ||| |||| | |||||| | |||||||| || |||| || ||
Sbjct 108289 GATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTT 108230
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||| | || || |||| ||||||||
Sbjct 108229 GCCGGTCATGGTCTTCGCAAAGATCTGCAT 108200
>seq11
Length=43820709
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||| || | || || | | |||| |||| ||
Sbjct 25320755 TGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGCGTGCGGCCATCCTCCAGCTGT 25320814
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || |||||||||| |||||| || || || || || || | || |||||||||||
Sbjct 25320815 TTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTTCTTGTCTTGAATTTTG 25320874
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | |||||| | || || ||||| |||| || ||||| ||
Sbjct 25320875 GCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTG 25320934
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || ||||| ||||||||
Sbjct 25320935 AGGGTCTTCACAAAGATCTGCAT 25320957
>seq9
Length=44311105
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|||| || ||||| || ||||| || || ||||| || | || || | | |||| |||
Sbjct 3708428 ACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCCGCCATCCTCC 3708369
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| || ||||| |||||||||| || ||| || || || || || || || || ||||||
Sbjct 3708368 AGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 3708309
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTG---TCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
||||| ||| ||| |||| ||||| ||| | || || ||||| |||| ||
Sbjct 3708308 ATTTTGGCTTTGACA--TTCT-CAGTGGTATCACTGGGCTCGACCTCAAGGGTGATGGTC 3708252
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||| || | || || ||||| ||||| ||
Sbjct 3708251 CTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/203 (70%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || ||||| || | | || | |||| |||| ||
Sbjct 19097329 TGCAGGGTGGACTCTTTCTGGATGTTGTATTCTGAGC--GTGAGGCCATCCTCCAGCTGT 19097272
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| | |||||||||| |||||| || || || || || || || || |||||||||||
Sbjct 19097271 TTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 19097212
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | |||||| | || || ||||| |||| || ||||| ||
Sbjct 19097211 GCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTG 19097152
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || ||||| ||||||||
Sbjct 19097151 AGGGTCTTCACAAAGATCTGCAT 19097129
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/203 (70%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || || || || || ||||| || | | || | | |||| |||| ||
Sbjct 14505847 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGC--GTGCGGCCATCCTCCAGCTGT 14505790
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || |||||||||| || ||| || || | || || ||||| || |||||||||||
Sbjct 14505789 TTGCCGGCAAATATCAGACACTGCTGGTCAAGTGGGATACCTTCCTTGTCTTGAATTTTG 14505730
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || |||||| | || || ||||| |||| || ||||| ||
Sbjct 14505729 GCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTG 14505670
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || ||||| ||||||||
Sbjct 14505669 AGGGTCTTCACAAAGATCTGCAT 14505647
>seq97
Length=8594300
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || ||| | || | || ||| | | ||| |||| ||
Sbjct 7807789 TGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCAGCCATGCTCCAGCTGT 7807730
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| | ||||| |||| || ||| || || || | || || || || |||||||||||
Sbjct 7807729 TTGCTGGCAAACATCAGACACTGCTGGTCAGGTAGGATACCCTCCTTGTCTTGAATTTTG 7807670
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | |||||| || || || ||||| |||| || ||||| ||
Sbjct 7807669 GCTTTGACATTCTCAATGGTGTCACCAGTCTCGACCTCAAGGGTGATGGTCTTGCCCGTG 7807610
Query 101447 AAAGTTTTTACAAATATCT 101465
| ||| || || || ||||
Sbjct 7807609 AGAGTCTTCACTAAGATCT 7807591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396265427578902
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |