Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq84 96.9 5e-15 >seq84 Length=9807938 Score = 96.9 bits (106), Expect = 5e-15 Identities = 183/264 (69%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 197023 AGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTT---G 197079 || || |||||||| ||||| || || | ||| || |||| | | || || || | Sbjct 4073703 AGCTCGTCGTCGCTGAAGCCAGTTCCAAGCTTGCATATGG---CCTGCAGCTCCTTACCG 4073759 Query 197080 TCGGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCG 197139 ||| || | | | ||| || | ||| | ||||| |||| | ||| ||| || Sbjct 4073760 TCGTCATCGCAGCGGGCCAGCAGGAAGCCCCCGTATCGGCCCGCACGCTTCCCCTGGCCC 4073819 Query 197140 TTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTC 197199 | || | ||||| |||||||| ||||||||||| | | | || | | | || ||| Sbjct 4073820 AGGGAGGCGCCGATCACCACCAGGTCCAGAGTGTCTC-CGCGCCACTGAGGCAGTCCTTC 4073878 Query 197200 TTCAGTTTGAGCCAG-CTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAG 197258 |||| ||||||||| | | | ||||||||||| ||||| | ||| || | || ||||| Sbjct 4073879 TTCATCTTGAGCCAGTCGTGT-GATCTCTTGGCGATCTCATGGGTAGCATCAACATCCAG 4073937 Query 197259 GGTCTTGATCATCAATCCCTCGCA 197282 |||||| ||||| | |||||||| Sbjct 4073938 GGTCTTCATCATTAGCCCCTCGCA 4073961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676706878803680