Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq134 82.4 6e-11 seq38 82.4 6e-11 >seq134 Length=5851302 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| || ||||| ||||| ||||| | | | || | || Sbjct 3733372 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 3733313 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 3733312 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 3733253 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | ||||| | || ||||| | || || || Sbjct 3733252 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 3733193 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| | ||||| || ||||||||||| Sbjct 3733192 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3733160 >seq38 Length=19171412 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| || ||||| ||||| ||||| | | | || | || Sbjct 14820530 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 14820589 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 14820590 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 14820649 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | ||||| | || ||||| | || || || Sbjct 14820650 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 14820709 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| | ||||| || ||||||||||| Sbjct 14820710 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 14820742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380925129769578