Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq151 190 4e-43 seq158 145 1e-29 seq37 118 2e-21 seq4 98.7 2e-15 seq9 86.0 1e-11 >seq151 Length=4079325 Score = 190 bits (210), Expect = 4e-43 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || | ||| || ||||| |||||||| ||||||||||| Sbjct 2046082 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTTTGTTTGAGCTGGGCCACCTGC 2046141 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 2046142 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 2046201 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 2046202 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 2046261 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 2046262 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 2046321 Query 241625 GAC 241627 ||| Sbjct 2046322 GAC 2046324 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/113 (76%), Gaps = 8/113 (7%) Strand=Plus/Plus Query 238928 TGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGTTA 238987 |||||||| ||||||||| | ||||| || | | |||||| | ||||| |||||||| Sbjct 2046121 TGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTC 2046180 Query 238988 TCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 2046181 TCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 2046233 >seq158 Length=3889429 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 2407204 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 2407263 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||||||||||||||| |||| |||||| ||||| Sbjct 2407264 TCCGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 2407323 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 2407324 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 2407383 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 2407384 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 2407416 >seq37 Length=19344684 Score = 118 bits (130), Expect = 2e-21 Identities = 351/534 (66%), Gaps = 17/534 (3%) Strand=Plus/Plus Query 47849 CCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGG 47908 || ||||| |||||||||||||| || || || |||| || || |||||||| ||| Sbjct 211328 CCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCTTCCAGTGAAATATTCTCCATAAAGTCA 211387 Query 47909 AAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGA---TCC 47965 || || || | | | |||| | | |||| ||||||||| | || Sbjct 211388 AATGGATTCTCTACTCTGAAAACCCTGCTAAAACCCA---GTTCCAGCATAAGTCTGTCT 211444 Query 47966 GCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGC 48025 || || |||| ||||||| ||| || ||| ||||| || ||||| ||| ||| Sbjct 211445 GCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGC 211504 Query 48026 AAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC--TGCT-TA 48082 || |||| || || ||||||| || ||| | || || | | ||| | || | Sbjct 211505 AAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCA---CTGATAATTATTTCTCTT 211561 Query 48083 ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCC 48142 || | |||||| ||||||| |||| ||| | | || ||| || || || Sbjct 211562 ACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGA---ACATCAGGCAAGCGAAATCA 211618 Query 48143 CTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACC 48202 | ||| || || || || | || | || | || || || ||| |||||||| | Sbjct 211619 CAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGT 211678 Query 48203 CCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACT 48262 || | | ||||||||||| || | || ||||| ||||| ||||||||||| |||||| Sbjct 211679 CCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACT 211738 Query 48263 GCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAG 48321 || || || || | | || || | | ||| | ||||| | |||| | ||| Sbjct 211739 GCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTTGTCCCCAACCCAGAGCAAG 211798 Query 48322 CGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||||| |||||||||||||||| || |||||||| || || || |||||| Sbjct 211799 -GCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCATTGAAGAG 211851 >seq4 Length=54856640 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 26850962 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 26850903 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | |||||||||||||| |||||| |||||||||| Sbjct 26850902 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATGCGCTCCTGGGACTCCATGTCG 26850843 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 26850842 ATGGGGGAC 26850834 >seq9 Length=44311105 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 1894392 GTGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 1894451 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || || || || |||||||| || |||| || |||||| ||| Sbjct 1894452 -TTGCTCTTCCGATTACAGGAGTCTTTATAGAGCATATACGGGGTACCTGTCTCTGTCTG 1894510 Query 213647 GGAC 213650 ||| Sbjct 1894511 AGAC 1894514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931501523786240