Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq151 190 4e-43
seq158 145 1e-29
seq37 118 2e-21
seq4 98.7 2e-15
seq9 86.0 1e-11
>seq151
Length=4079325
Score = 190 bits (210), Expect = 4e-43
Identities = 188/243 (77%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||||||||| | || | ||| || ||||| |||||||| |||||||||||
Sbjct 2046082 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTTTGTTTGAGCTGGGCCACCTGC 2046141
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | |||||| | ||||| || ||||| || | ||||||| ||||||
Sbjct 2046142 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 2046201
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 2046202 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 2046261
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| ||
Sbjct 2046262 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 2046321
Query 241625 GAC 241627
|||
Sbjct 2046322 GAC 2046324
Score = 86.0 bits (94), Expect = 1e-11
Identities = 86/113 (76%), Gaps = 8/113 (7%)
Strand=Plus/Plus
Query 238928 TGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGTTA 238987
|||||||| ||||||||| | ||||| || | | |||||| | ||||| ||||||||
Sbjct 2046121 TGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTC 2046180
Query 238988 TCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
|| | ||||||| | | |||||||| ||||||||||| ||||||||
Sbjct 2046181 TCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 2046233
>seq158
Length=3889429
Score = 145 bits (160), Expect = 1e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||| | ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 2407204 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 2407263
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | |||||| |||||||||||||||||| |||| |||||| |||||
Sbjct 2407264 TCCGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 2407323
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||||
Sbjct 2407324 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 2407383
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 2407384 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 2407416
>seq37
Length=19344684
Score = 118 bits (130), Expect = 2e-21
Identities = 351/534 (66%), Gaps = 17/534 (3%)
Strand=Plus/Plus
Query 47849 CCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGG 47908
|| ||||| |||||||||||||| || || || |||| || || |||||||| |||
Sbjct 211328 CCTACTCTCTTCTCAAAGAAGTTAGTGTTTCCTTCCAGTGAAATATTCTCCATAAAGTCA 211387
Query 47909 AAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGA---TCC 47965
|| || || | | | |||| | | |||| ||||||||| | ||
Sbjct 211388 AATGGATTCTCTACTCTGAAAACCCTGCTAAAACCCA---GTTCCAGCATAAGTCTGTCT 211444
Query 47966 GCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGC 48025
|| || |||| ||||||| ||| || ||| ||||| || ||||| ||| |||
Sbjct 211445 GCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGC 211504
Query 48026 AAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC--TGCT-TA 48082
|| |||| || || ||||||| || ||| | || || | | ||| | || |
Sbjct 211505 AAGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCA---CTGATAATTATTTCTCTT 211561
Query 48083 ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCC 48142
|| | |||||| ||||||| |||| ||| | | || ||| || || ||
Sbjct 211562 ACTCTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGA---ACATCAGGCAAGCGAAATCA 211618
Query 48143 CTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACC 48202
| ||| || || || || | || | || | || || || ||| |||||||| |
Sbjct 211619 CAGTGTAAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGT 211678
Query 48203 CCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACT 48262
|| | | ||||||||||| || | || ||||| ||||| ||||||||||| ||||||
Sbjct 211679 CCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACT 211738
Query 48263 GCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAG 48321
|| || || || | | || || | | ||| | ||||| | |||| | |||
Sbjct 211739 GCAGCAAAGGCTGCAACGTGTTCACCATAGGTAGCCTCTTTGTCCCCAACCCAGAGCAAG 211798
Query 48322 CGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375
||||| |||||||||||||||| || |||||||| || || || ||||||
Sbjct 211799 -GCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCATTGAAGAG 211851
>seq4
Length=54856640
Score = 98.7 bits (108), Expect = 2e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 26850962 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 26850903
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | |||||||||||||| |||||| ||||||||||
Sbjct 26850902 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATGCGCTCCTGGGACTCCATGTCG 26850843
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 26850842 ATGGGGGAC 26850834
>seq9
Length=44311105
Score = 86.0 bits (94), Expect = 1e-11
Identities = 95/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||| | || || |||||||||||||||||| |||||| ||||||||||| |||
Sbjct 1894392 GTGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 1894451
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || || || || |||||||| || |||| || |||||| |||
Sbjct 1894452 -TTGCTCTTCCGATTACAGGAGTCTTTATAGAGCATATACGGGGTACCTGTCTCTGTCTG 1894510
Query 213647 GGAC 213650
|||
Sbjct 1894511 AGAC 1894514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931501523786240
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