Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq37 116 7e-21 >seq37 Length=19344684 Score = 116 bits (128), Expect = 7e-21 Identities = 298/447 (67%), Gaps = 14/447 (3%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| |||| ||||||||||| | |||| ||||| || || || || ||| ||| Sbjct 212042 ACGTTCTGGCTTTCTTTGCAGCAAGTTATGGCATAGTAAATGAAAACTTGGTGGAGCGAT 211983 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 | | | ||||| ||| | || ||| | |||||||| || ||||| |||||||| Sbjct 211982 TTAGCCAAGAAGTTCAGATCACAGAAGCCCACTGTTTCTATGGCTTCCAAATGGCCATGA 211923 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCG 25771 |||| | || ||||| | ||| | || || || || ||||| | ||| | Sbjct 211922 AAAACATACATTCTGAAATATAT---AGTCTCCTTATTGACACTTACATAAAAGATCCCA 211866 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 ||| || || || || ||| || || || || | |||||| |||||| Sbjct 211865 ACGAAAGGGAATTTCTCTTCAATGCTATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAG 211806 Query 25832 GGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||| || ||| | ||| |||| ||||| | ||| || | | | || Sbjct 211805 ATTGGGCCTTGCTCTGGGTTGGGGACAA--AGAG-GCTACCTATGGTGAACACGTTGCAG 211749 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 |||||||||| ||||| |||||||| || ||||| ||||| |||| |||||||||| Sbjct 211748 CCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCA 211689 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || | | | |||| ||||| || || ||||| || || || | |||| || ||| Sbjct 211688 AG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTACTGGCAGAGATGAG 211630 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTG 26034 ||| | ||| | ||||| || |||||| Sbjct 211629 GGTTTACACTGTGATTTCGCTTGCCTG 211603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928813614035840