Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq74 132 6e-26 >seq74 Length=10970457 Score = 132 bits (146), Expect = 6e-26 Identities = 214/305 (70%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 153707 AAGTGGTAACACAGGATGTAAATTCATCACTTCGAT-CGCCCGCGTCCCTCAGATGCTCG 153765 ||||||| || ||||||| ||| | || | || |||| || ||| | |||||||| Sbjct 8345794 AAGTGGTGACCCAGGATG-AAAGAGAGCAGCTGAATACGCCTGCTTCCTTAAGATGCTCT 8345736 Query 153766 TTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAGGTCCA 153825 || ||||||| | ||| | ||||| || ||||| || |||||||||||| | ||| Sbjct 8345735 CTGCAAACTACCTACGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 8345676 Query 153826 GAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATAAAGAT 153885 ||||| || ||||| | ||||| | | || || ||| | ||||| | ||||| || Sbjct 8345675 GAAAACATAGCCACCTTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTATAAGGAC 8345616 Query 153886 AGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATGCAACA 153945 | | || || ||| | | || || |||| | || || | |||||| | || Sbjct 8345615 AAGTTGAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCATCTGGAATACCACC 8345556 Query 153946 CTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGGTATCG 154005 ||||| |||||||| ||||| |||||||| || |||| || |||| ||| ||| | || Sbjct 8345555 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCA 8345496 Query 154006 GGAAC 154010 ||||| Sbjct 8345495 GGAAC 8345491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649277399779360