Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq2 327 1e-84
seq74 172 6e-38
seq32 84.2 3e-11
>seq2
Length=71252344
Score = 327 bits (362), Expect = 1e-84
Identities = 670/989 (68%), Gaps = 9/989 (1%)
Strand=Plus/Minus
Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106
|||| |||||| || |||| ||| |||| ||| || | |||||| || |||| || |||
Sbjct 67570523 TGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTA 67570464
Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166
|| || ||||| ||||| || | || ||||||| || ||| || | ||||| |||
Sbjct 67570463 TTGGCAAACAGGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAAACG 67570407
Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226
|| || || || | |||||| |||| ||| || ||||| |||| || | || |||
Sbjct 67570406 CACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCCTGAAAACATCA 67570347
Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286
|| || ||||||||||||| ||||||||||| | |||||||||||| || |||||
Sbjct 67570346 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCCTGCATGTCAGACAAATCGTAC 67570287
Query 160287 TTGTACATCAGGGGAACGGCA-CCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345
|| | | || || | | || || || | || || | ||| | ||| ||||| ||
Sbjct 67570286 TTATGGCT-AGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTAGCCCAGAG 67570228
Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTC 160405
| || || ||||| || ||||| | | ||||||||| |||| | |||| |
Sbjct 67570227 ATACTCATCAGGGCTATATGTGTCTTGCGCCCATTCCATAAACTTTTGGATTTTTTCATT 67570168
Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465
| | || || | || || || | || |||||||| || ||||| || || |
Sbjct 67570167 CTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAG 67570108
Query 160466 CGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525
||| | | || || |||| | || ||||| | || | ||| || |
Sbjct 67570107 GGGTGTTTCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAACTTTCCATTAAT 67570048
Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585
| | | | ||||| |||||||| | ||| | | |||||| | ||||| || ||
Sbjct 67570047 GACCTCATACCGCTTTTTCCACCTTTCTTCCTTATTGGATGGCATCCTCTCCGTTTCCAG 67569988
Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645
|||| | || | | | || |||| | |||| || || ||||| || || | ||
Sbjct 67569987 GTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGG 67569928
Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705
||| || | || || | || |||| ||||||||| || || |||| ||| |||||
Sbjct 67569927 AAAATCCATCCCACAAAGATTGATCAGGTACTTCCAATTTGCCCTCATTGCGTAGAGGTC 67569868
Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765
| ||||||| || | || ||||| || |||||||| || || || || || |||| |
Sbjct 67569867 CTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCAA 67569808
Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAG 160823
| |||||||| ||||| ||| |||||| || | || |||| ||| || || |||
Sbjct 67569807 TCGGCTGGCCACGAAGACATTACTGAAACAGGAAGCAATGCCCATCACTGC-AGCTAAAT 67569749
Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883
| | | || | || | |||||| || | |||||| | ||||||||| ||||||
Sbjct 67569748 AGGAA-TCCTCGGATTTCCTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATG 67569690
Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943
||||| || | ||| || | ||| || ||||| ||||| | ||||||||| || |||||
Sbjct 67569689 GCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACGATAGAATACGCTATT 67569630
Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003
|||||||| | ||| || ||| |||| | | | || || ||| ||||||| |||
Sbjct 67569629 GGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCCTCTTGATGAAA 67569570
Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032
||| ||| || | |||||||| |||||
Sbjct 67569569 GAATTACAGTCACTGGTCATGTTTATATA 67569541
>seq74
Length=10970457
Score = 172 bits (190), Expect = 6e-38
Identities = 232/323 (72%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209
|| || || | ||| | | |||| || ||||| || | || || || |||||||| |||
Sbjct 8345473 TAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGACAC 8345532
Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269
||| | || ||||| ||||||| |||||||||||| | || | ||||||||| ||||
Sbjct 8345533 ATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGATGGTGATGGTTGAGTTTTGGAGT 8345592
Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329
|||| ||| || ||||||| || ||||| | ||| || || || || || | | |
Sbjct 8345593 CCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATAGCTG 8345652
Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389
| |||||||||||| ||||| || ||||| || || | |||||||| || || |||
Sbjct 8345653 TTGCTGAAGGTGGCTATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATC 8345712
Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449
|| || || | || ||||| || ||||| | ||||| || || |||||| | |||
Sbjct 8345713 AGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATTCAGCTGCTCT 8345772
Query 168450 CGCTCATCTTGAGTTACGACCTG 168472
| ||||| || || || || ||
Sbjct 8345773 CTTTCATCCTGGGTCACCACTTG 8345795
Score = 109 bits (120), Expect = 6e-19
Identities = 150/209 (72%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 167894 GTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACT 167953
||| || ||||| |||| || || |||| ||| |||||||| || || || ||| |
Sbjct 8342166 GTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTCCCCACCTGATT 8342222
Query 167954 CTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAAC 168013
||| || ||||| || || | |||||||| ||| ||| || ||||| | || | ||
Sbjct 8342223 CTTAGGGTCTTTGACCTGGAGGATGCTAGTAACAGATGTGGTCCCATTTGGGTGAGACAC 8342282
Query 168014 GGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGG 168073
|| | || || || ||||||||||| | | ||||||||| | || || || || ||
Sbjct 8342283 AGTCTCTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGGAGATCACGGGGGCTGG 8342342
Query 168074 TCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
|| || || |||||||| || |||||||
Sbjct 8342343 GCGGGCAGTGGCAGAGCAAGTGATATTTA 8342371
>seq32
Length=21366645
Score = 84.2 bits (92), Expect = 3e-11
Identities = 194/290 (67%), Gaps = 7/290 (2%)
Strand=Plus/Minus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
||| || || || || ||||| || || ||| || || ||||| |||| ||| || |
Sbjct 18737952 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAATGCAAGTCCCCAGC 18737896
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
||| |||| |||| | || ||| | || |||||| || | || || ||
Sbjct 18737895 CCCATACACACAGATAGCCCGCTGGTGGATTCCAGAGCAAGGGCCATAAGGGGCACCCTT 18737836
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
| ||| ||||| | ||||||||| || | |||||| || | |||||| ||
Sbjct 18737835 ACTGATGTCTCCTTCATGACTCTGCCACTTGACCAGCCTGGCAATGGAAATCATGTCTGA 18737776
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334
| |||| || ||| ||||||| | || || | | || ||| ||||| |||
Sbjct 18737775 GATGTCATACTTGCGGTGGTGGGGAACAGAGCCAGGCATCCACCATGCA--CGCTGCAGG 18737718
Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384
|||||||| ||||||||||| ||||| || ||||| || |||||| ||
Sbjct 18737717 GTGGCCCAGAGGTGTTCGTCAGGGCTATAGGTGTCTTTTACCCATTCAAT 18737668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577199819865360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |