Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2 327 1e-84 seq74 172 6e-38 seq32 84.2 3e-11 >seq2 Length=71252344 Score = 327 bits (362), Expect = 1e-84 Identities = 670/989 (68%), Gaps = 9/989 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || |||| ||| |||| ||| || | |||||| || |||| || ||| Sbjct 67570523 TGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTA 67570464 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || ||||| ||||| || | || ||||||| || ||| || | ||||| ||| Sbjct 67570463 TTGGCAAACAGGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAAACG 67570407 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | |||||| |||| ||| || ||||| |||| || | || ||| Sbjct 67570406 CACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCCTGAAAACATCA 67570347 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | |||||||||||| || ||||| Sbjct 67570346 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCCTGCATGTCAGACAAATCGTAC 67570287 Query 160287 TTGTACATCAGGGGAACGGCA-CCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 || | | || || | | || || || | || || | ||| | ||| ||||| || Sbjct 67570286 TTATGGCT-AGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTAGCCCAGAG 67570228 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTC 160405 | || || ||||| || ||||| | | ||||||||| |||| | |||| | Sbjct 67570227 ATACTCATCAGGGCTATATGTGTCTTGCGCCCATTCCATAAACTTTTGGATTTTTTCATT 67570168 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | | || || | || || || | || |||||||| || ||||| || || | Sbjct 67570167 CTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAG 67570108 Query 160466 CGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 ||| | | || || |||| | || ||||| | || | ||| || | Sbjct 67570107 GGGTGTTTCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAACTTTCCATTAAT 67570048 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 | | | | ||||| |||||||| | ||| | | |||||| | ||||| || || Sbjct 67570047 GACCTCATACCGCTTTTTCCACCTTTCTTCCTTATTGGATGGCATCCTCTCCGTTTCCAG 67569988 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 |||| | || | | | || |||| | |||| || || ||||| || || | || Sbjct 67569987 GTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGG 67569928 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 ||| || | || || | || |||| ||||||||| || || |||| ||| ||||| Sbjct 67569927 AAAATCCATCCCACAAAGATTGATCAGGTACTTCCAATTTGCCCTCATTGCGTAGAGGTC 67569868 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 | ||||||| || | || ||||| || |||||||| || || || || || |||| | Sbjct 67569867 CTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCAA 67569808 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAG 160823 | |||||||| ||||| ||| |||||| || | || |||| ||| || || ||| Sbjct 67569807 TCGGCTGGCCACGAAGACATTACTGAAACAGGAAGCAATGCCCATCACTGC-AGCTAAAT 67569749 Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 | | | || | || | |||||| || | |||||| | ||||||||| |||||| Sbjct 67569748 AGGAA-TCCTCGGATTTCCTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATG 67569690 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 ||||| || | ||| || | ||| || ||||| ||||| | ||||||||| || ||||| Sbjct 67569689 GCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACGATAGAATACGCTATT 67569630 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 |||||||| | ||| || ||| |||| | | | || || ||| ||||||| ||| Sbjct 67569629 GGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCCTCTTGATGAAA 67569570 Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032 ||| ||| || | |||||||| ||||| Sbjct 67569569 GAATTACAGTCACTGGTCATGTTTATATA 67569541 >seq74 Length=10970457 Score = 172 bits (190), Expect = 6e-38 Identities = 232/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || | || || || |||||||| ||| Sbjct 8345473 TAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGACAC 8345532 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| ||||||| |||||||||||| | || | ||||||||| |||| Sbjct 8345533 ATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGATGGTGATGGTTGAGTTTTGGAGT 8345592 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| ||| || ||||||| || ||||| | ||| || || || || || | | | Sbjct 8345593 CCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATAGCTG 8345652 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||||||||||| ||||| || ||||| || || | |||||||| || || ||| Sbjct 8345653 TTGCTGAAGGTGGCTATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATC 8345712 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || || | || ||||| || ||||| | ||||| || || |||||| | ||| Sbjct 8345713 AGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATTCAGCTGCTCT 8345772 Query 168450 CGCTCATCTTGAGTTACGACCTG 168472 | ||||| || || || || || Sbjct 8345773 CTTTCATCCTGGGTCACCACTTG 8345795 Score = 109 bits (120), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 167894 GTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACT 167953 ||| || ||||| |||| || || |||| ||| |||||||| || || || ||| | Sbjct 8342166 GTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTCCCCACCTGATT 8342222 Query 167954 CTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAAC 168013 ||| || ||||| || || | |||||||| ||| ||| || ||||| | || | || Sbjct 8342223 CTTAGGGTCTTTGACCTGGAGGATGCTAGTAACAGATGTGGTCCCATTTGGGTGAGACAC 8342282 Query 168014 GGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGG 168073 || | || || || ||||||||||| | | ||||||||| | || || || || || Sbjct 8342283 AGTCTCTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGGAGATCACGGGGGCTGG 8342342 Query 168074 TCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || || || |||||||| || ||||||| Sbjct 8342343 GCGGGCAGTGGCAGAGCAAGTGATATTTA 8342371 >seq32 Length=21366645 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/290 (67%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || ||||| |||| ||| || | Sbjct 18737952 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAATGCAAGTCCCCAGC 18737896 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| |||| |||| | || ||| | || |||||| || | || || || Sbjct 18737895 CCCATACACACAGATAGCCCGCTGGTGGATTCCAGAGCAAGGGCCATAAGGGGCACCCTT 18737836 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | ||| ||||| | ||||||||| || | |||||| || | |||||| || Sbjct 18737835 ACTGATGTCTCCTTCATGACTCTGCCACTTGACCAGCCTGGCAATGGAAATCATGTCTGA 18737776 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | |||| || ||| ||||||| | || || | | || ||| ||||| ||| Sbjct 18737775 GATGTCATACTTGCGGTGGTGGGGAACAGAGCCAGGCATCCACCATGCA--CGCTGCAGG 18737718 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| ||||||||||| ||||| || ||||| || |||||| || Sbjct 18737717 GTGGCCCAGAGGTGTTCGTCAGGGCTATAGGTGTCTTTTACCCATTCAAT 18737668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577199819865360