Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq134 113 8e-20 seq38 113 8e-20 seq102 107 3e-18 seq101 107 3e-18 seq116 104 4e-17 seq54 102 1e-16 seq4 102 1e-16 seq85 98.7 2e-15 seq8 95.1 2e-14 seq14 89.7 9e-13 seq218 87.8 3e-12 >seq134 Length=5851302 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 3733368 ACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 3733309 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 3733308 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 3733249 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 3733248 ATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTC 3733189 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || |||||||| Sbjct 3733188 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 3733157 >seq38 Length=19171412 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 14820534 ACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 14820593 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 14820594 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 14820653 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 14820654 ATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTC 14820713 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || |||||||| Sbjct 14820714 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 14820745 >seq102 Length=8035806 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 ||||| || | ||||| ||| || ||| || ||||| | |||| | ||| || Sbjct 179588 ACCAGGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCAAAGTACGTCC----ATCTTCC 179533 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||| ||| ||||| || Sbjct 179532 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCTTTCCTTATCATGG 179473 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||| ||| |||| |||| || |||| || | |||||||| || || || || || Sbjct 179472 ATTGTGGCCTTTACATTTTCTATCTTATCTGAGGGTTCAACTTCGAGGGTGATGGTCTTC 179413 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || |||||||| Sbjct 179412 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 179381 >seq101 Length=8127303 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| |||||||| || || || | | |||| || Sbjct 4241898 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTATAGTCAGACAAAGTACAACAATCTTCC 4241957 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||||||||| || Sbjct 4241958 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGG 4242017 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| | |||| || ||| | || || || ||||| || Sbjct 4242018 ATCTTGGCCTTTACATTTTCTGTCATATCTGAGAGTTCATCCTCGAGGGTGATAGTCTTC 4242077 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | || ||||| | || || |||||||| Sbjct 4242078 CCCATAAGGGTTTTCATGAAAATCTGCATTTT 4242109 >seq116 Length=6990774 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| || ||| ||| || ||| || ||||| || || || | ||| || Sbjct 541713 ACAAGATGAAAAATAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 541654 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 541653 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 541594 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| ||| || ||||| |||| ||| | | || || || || || Sbjct 541593 ATCTTGGCCTTTACGTTTTCTATTGTATCCGAAGGTTCAGCCTTGAGGGTGATGGTCTTC 541534 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | || ||||| ||||| || |||||||| Sbjct 541533 CCCATAAGGGTTTTCACAAAAATCTGCATTTT 541502 >seq54 Length=16265076 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || | | ||| || Sbjct 5607017 ACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAATACATCCATCTTCC 5607076 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| || ||||| ||||| || Sbjct 5607077 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGA 5607136 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||||| || | ||| | || || || || || || Sbjct 5607137 ATCTTGGCCTTTACATTTTCTGTAGTATCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTC 5607196 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 ||||| || ||||| ||||| || ||| ||| Sbjct 5607197 CCTGTAAGGGTTTTCACAAAAATCTGCTTTT 5607227 >seq4 Length=54856640 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | |||| ||| || ||| || ||||| || Sbjct 17517737 ACCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGA 17517678 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| || | ||| || || ||||| || | | | || ||||||||||| Sbjct 17517677 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTGATCAGGAGG 17517618 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||| |||| | ||| || || |||| |||| |||| || ||||| || | ||| | Sbjct 17517617 AATTTCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGC 17517558 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| ||||| || || || || |||| || || || |||||||| Sbjct 17517557 CTCGAGAGTGATAGTCTTCCCCGTAAGGATTTTCACGAAAATCTGCATTTT 17517507 >seq85 Length=9676098 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | || || Sbjct 5982637 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTGTCTTCC 5982578 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || ||| || ||||||||||| |||||||| ||||| || Sbjct 5982577 AGTTACTTGCCAGCAAAGATCCGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 5982518 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| | ||||| || | ||||| || || || || || || Sbjct 5982517 ATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 5982458 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| || || || |||||||| Sbjct 5982457 CCTGTAAGGGTTTTCACGAAAATCTGCATTTT 5982426 >seq8 Length=45331107 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||||||| | |||| ||| || ||| || ||||| || | || | ||| ||| Sbjct 31945648 ACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCT 31945589 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||| | || ||||| || ||||||||||| |||||||| ||||| || Sbjct 31945588 AGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 31945529 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| ||| | ||||| || | ||||| | || || ||||| || Sbjct 31945528 ATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAACCTGGAGGGTGATAGTCTTC 31945469 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || || |||| | || || |||||||| Sbjct 31945468 TCCGTAAGAGTTTGTGTGAAAATCTGCATTTT 31945437 >seq14 Length=37227512 Score = 89.7 bits (98), Expect = 9e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | ||| | ||||||||||| |||||||| || Sbjct 27607842 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTCCTGATCAGGAGGAATTCCTTCCTT 27607901 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| | || ||||| | ||||| || || || || Sbjct 27607902 ATCCTGGATCTTGGCCTTTACATTTTCTGTCGTGTCGGAGGGTTCAACCTCAAGGGTGAT 27607961 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || || | || ||||| ||||| || |||||||| Sbjct 27607962 GATCTTCCCCATGAGGGTTTTCACAAAAATCTGCATTTT 27608000 >seq218 Length=888862 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | || || Sbjct 160583 ACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCCTCTTCC 160642 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || ||| || ||||||||||| |||||||| ||||| || Sbjct 160643 AGTTGCTTGCCAGCAAAGATG--TCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 160700 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || ||| |||| |||| || |||| || | ||||| || || || || || || Sbjct 160701 ATCTTGACCTTTACATTTTCTATCCTATCCGAGGGTTCAACCTCAAGGGTGATGGTCTTC 160760 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | || ||||| || || || |||||||| Sbjct 160761 CCCTTAAGGGTTTTCACGAAAATCTGCATTTT 160792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899624194103520