Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq101 87.8 3e-12 >seq101 Length=8127303 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || || ||||| | | || || ||||| || | || | ||| Sbjct 4242109 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACTATCACCCTCGAGGATGAACTC 4242050 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| | ||| || || || || || ||||||||||| || ||||| || Sbjct 4242049 TCAGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 4241990 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || |||||| |||| | ||| || ||||| || |||||| | ||||| || || ||| Sbjct 4241989 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATTGTTGTACTTTGTCTGACTAT 4241930 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || || ||| ||| | || |||||| | ||||| ||| Sbjct 4241929 AACAT-TCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGA 4241891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731847427397600