Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq134 136 7e-27 seq38 136 7e-27 seq52 123 5e-23 seq85 118 2e-21 seq218 114 2e-20 seq102 107 3e-18 seq4 104 4e-17 seq101 100 5e-16 seq116 95.1 2e-14 seq8 93.3 8e-14 >seq134 Length=5851302 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| || Sbjct 3733396 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTT 3733337 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 3733336 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 3733277 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||||||| Sbjct 3733276 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGA 3733217 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 3733216 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 3733157 >seq38 Length=19171412 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| || Sbjct 14820506 TTTCTTAGCACCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTT 14820565 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 14820566 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 14820625 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||||||| Sbjct 14820626 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGA 14820685 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 14820686 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 14820745 >seq52 Length=16356641 Score = 123 bits (136), Expect = 5e-23 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTC----GTAATACTAAATGTAAAGTAGCCTCTTTAGAAA 171888 |||| || |||||| ||||| |||| || | ||| | ||||| ||| || || Sbjct 10619116 TTTCTTAGCACCACCATGAAGTCTCGTGTAACACAAGATGAAGAGTAGACTCCTTCTGAA 10619057 Query 171889 TATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCT 171948 | || || || || |||| ||| | || |||| ||| || |||||||| || | ||| | Sbjct 10619056 TGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTT 10618997 Query 171949 GTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTAT 172008 | || ||||| || |||||||| ||||| || || || |||||||| ||| |||| Sbjct 10618996 GCTGCTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTAT 10618937 Query 172009 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068 | || | ||| || || || || ||||| || || || | ||||| | ||| ||||||| Sbjct 10618936 CCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCA 10618877 Query 172069 TTTT 172072 |||| Sbjct 10618876 TTTT 10618873 >seq85 Length=9676098 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 ||||||| |||||| ||||| || || | ||| | ||||| ||| || ||| || Sbjct 5982665 TTTCATAGCACCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 5982606 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| ||| |||| || || |||||||| || ||| || || Sbjct 5982605 GTAGTCAGACAAAGTACGTCTGTCTTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTG 5982546 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | | ||||| || Sbjct 5982545 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGA 5982486 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 5982485 GGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 5982426 >seq218 Length=888862 Score = 114 bits (126), Expect = 2e-20 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| || Sbjct 160555 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTT 160614 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || ||| || || Sbjct 160615 GTAGTCAGACAAAGTACGTCCCTCTTCCAGTTGCTTGCCAGCAAAGATG--TCTTTGCTG 160672 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||| || Sbjct 160673 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGACCTTTACATTTTCTATCCTATCCGA 160732 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || | | ||||| | ||| ||||||||||| Sbjct 160733 GGGTTCAACCTCAAGGGTGATGGTCTTCCCCTTAAGGGTTTTCACGAAAATCTGCATTTT 160792 Score = 87.8 bits (96), Expect = 3e-12 Identities = 164/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| || || ||| || Sbjct 683664 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTTCTTCTGAATGTT 683723 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || |||||||| || | ||| || || Sbjct 683724 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 683783 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | |||| Sbjct 683784 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT-----TTCTATCCAG 683838 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||| | || | || ||||| || || | | ||||| | ||| ||||||||||| Sbjct 683839 CG-TTCAGCCTCGAAGGTGATGGTCTTCCCCTTAAGGGTTTTCACGAAAATCTGCATTTT 683897 >seq102 Length=8035806 Score = 107 bits (118), Expect = 3e-18 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | | ||| || || | || | |||| ||| || ||| || Sbjct 179616 TTTCTTAGCACCACCACGAGGTCTCAACACCAGGTGAAGTGTAGACTCCTTTTGAATGTT 179557 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 179556 GTAGTC----AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 179501 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||| ||| ||||| || ||| | |||||||| ||| ||||||| Sbjct 179500 ATCAGGAGGAATTCTTTCCTTATCATGGATTGTGGCCTTTACATTTTCTATCTTATCTGA 179441 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| ||||| || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 179440 GGGTTCAACTTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 179381 >seq4 Length=54856640 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| | || | ||| | ||||| ||| || ||| || Sbjct 17517746 TTTCTTAGCACCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTT 17517687 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | | | || || Sbjct 17517686 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTG 17517627 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||| |||| | ||| || || || |||||||| ||| ||||| || Sbjct 17517626 ATCAGGAGGAATTTCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 17517567 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || ||||| || || || || || | |||| | ||| ||||||||||| Sbjct 17517566 GGGTTCAGCCTCGAGAGTGATAGTCTTCCCCGTAAGGATTTTCACGAAAATCTGCATTTT 17517507 >seq101 Length=8127303 Score = 100 bits (110), Expect = 5e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || ||||| ||||| || || | ||| | ||||| ||| || ||| || Sbjct 4241870 TTTCTTAGCACCACTGTGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 4241929 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 ||| || || |||| | || |||| ||| || |||||||| || | ||| || || Sbjct 4241930 ATAGTCAGACAAAGTACAACAATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 4241989 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||||||||| || || || |||||||| | | ||||||| Sbjct 4241990 ATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTGTCATATCTGA 4242049 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| | || || || || || || || | | ||||| ||||| ||||||||||| Sbjct 4242050 GAGTTCATCCTCGAGGGTGATAGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 4242109 >seq116 Length=6990774 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | | || || || | ||| ||| ||| ||| || ||| || Sbjct 541741 TTTCTTAGCACCACCACGACTTCTCAACACAAGATGAAAAATAGACTCCTTTTGAATGTT 541682 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || |||||||| || | ||| || || Sbjct 541681 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 541622 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || ||||| || ||| ||||| || Sbjct 541621 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGA 541562 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | | || || ||||| || || | | ||||| | || ||||||||||| Sbjct 541561 AGGTTCAGCCTTGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATTTT 541502 >seq8 Length=45331107 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| ||||| || || | ||| | ||||| ||| || ||| || || || || Sbjct 31945667 ACCACCATGAAGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 31945608 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || ||| | || || | ||| || |||||| | || ||||| || || ||||| || Sbjct 31945607 CAGAGTACGTCCATCTTCTAGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGG 31945548 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || ||||| || | | |||||||| | ||| || Sbjct 31945547 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAAC 31945488 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || || || || || | || | |||| |||| ||||||||||| Sbjct 31945487 CTGGAGGGTGATAGTCTTCTCCGTAAGAGTTTGTGTGAAAATCTGCATTTT 31945437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905105610058800