Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq134 136 7e-27
seq38 136 7e-27
seq52 123 5e-23
seq85 118 2e-21
seq218 114 2e-20
seq102 107 3e-18
seq4 104 4e-17
seq101 100 5e-16
seq116 95.1 2e-14
seq8 93.3 8e-14
>seq134
Length=5851302
Score = 136 bits (150), Expect = 7e-27
Identities = 174/240 (73%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| ||
Sbjct 3733396 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTT 3733337
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| | || |||| ||| || |||||||| || | ||| || ||
Sbjct 3733336 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 3733277
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || |||||||| ||| ||||||||
Sbjct 3733276 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGA 3733217
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| || || || || ||||| || || || | ||||| | ||| |||||||||||
Sbjct 3733216 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 3733157
>seq38
Length=19171412
Score = 136 bits (150), Expect = 7e-27
Identities = 174/240 (73%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| ||
Sbjct 14820506 TTTCTTAGCACCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTT 14820565
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| | || |||| ||| || |||||||| || | ||| || ||
Sbjct 14820566 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 14820625
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || |||||||| ||| ||||||||
Sbjct 14820626 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGA 14820685
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| || || || || ||||| || || || | ||||| | ||| |||||||||||
Sbjct 14820686 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 14820745
>seq52
Length=16356641
Score = 123 bits (136), Expect = 5e-23
Identities = 174/244 (71%), Gaps = 4/244 (2%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTC----GTAATACTAAATGTAAAGTAGCCTCTTTAGAAA 171888
|||| || |||||| ||||| |||| || | ||| | ||||| ||| || ||
Sbjct 10619116 TTTCTTAGCACCACCATGAAGTCTCGTGTAACACAAGATGAAGAGTAGACTCCTTCTGAA 10619057
Query 171889 TATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCT 171948
| || || || || |||| ||| | || |||| ||| || |||||||| || | ||| |
Sbjct 10619056 TGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTT 10618997
Query 171949 GTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTAT 172008
| || ||||| || |||||||| ||||| || || || |||||||| ||| ||||
Sbjct 10618996 GCTGCTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTAT 10618937
Query 172009 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068
| || | ||| || || || || ||||| || || || | ||||| | ||| |||||||
Sbjct 10618936 CCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCA 10618877
Query 172069 TTTT 172072
||||
Sbjct 10618876 TTTT 10618873
>seq85
Length=9676098
Score = 118 bits (130), Expect = 2e-21
Identities = 170/240 (71%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
||||||| |||||| ||||| || || | ||| | ||||| ||| || ||| ||
Sbjct 5982665 TTTCATAGCACCACCATGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 5982606
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| ||| |||| || || |||||||| || ||| || ||
Sbjct 5982605 GTAGTCAGACAAAGTACGTCTGTCTTCCAGTTACTTGCCAGCAAAGATCCGTCTTTGCTG 5982546
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || |||||||| | | ||||| ||
Sbjct 5982545 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGA 5982486
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| || || || || ||||| || || || | ||||| | ||| |||||||||||
Sbjct 5982485 GGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 5982426
>seq218
Length=888862
Score = 114 bits (126), Expect = 2e-20
Identities = 170/240 (71%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| || || | ||| | ||||| ||| || ||| ||
Sbjct 160555 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTT 160614
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| | || |||| ||| || |||||||| || ||| || ||
Sbjct 160615 GTAGTCAGACAAAGTACGTCCCTCTTCCAGTTGCTTGCCAGCAAAGATG--TCTTTGCTG 160672
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || |||||||| ||| |||| ||
Sbjct 160673 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGACCTTTACATTTTCTATCCTATCCGA 160732
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| || || || || ||||| || || | | ||||| | ||| |||||||||||
Sbjct 160733 GGGTTCAACCTCAAGGGTGATGGTCTTCCCCTTAAGGGTTTTCACGAAAATCTGCATTTT 160792
Score = 87.8 bits (96), Expect = 3e-12
Identities = 164/240 (68%), Gaps = 6/240 (3%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| || || | ||| | ||||| || || ||| ||
Sbjct 683664 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTTCTTCTGAATGTT 683723
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| | | | || |||| ||| || |||||||| || | ||| || ||
Sbjct 683724 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 683783
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || |||||||| | ||||
Sbjct 683784 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT-----TTCTATCCAG 683838
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| ||| | || | || ||||| || || | | ||||| | ||| |||||||||||
Sbjct 683839 CG-TTCAGCCTCGAAGGTGATGGTCTTCCCCTTAAGGGTTTTCACGAAAATCTGCATTTT 683897
>seq102
Length=8035806
Score = 107 bits (118), Expect = 3e-18
Identities = 168/240 (70%), Gaps = 4/240 (2%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | | ||| || || | || | |||| ||| || ||| ||
Sbjct 179616 TTTCTTAGCACCACCACGAGGTCTCAACACCAGGTGAAGTGTAGACTCCTTTTGAATGTT 179557
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || |||| ||| | || |||| ||| || |||||||| || | ||| || ||
Sbjct 179556 GTAGTC----AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 179501
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||| ||| ||||| || ||| | |||||||| ||| |||||||
Sbjct 179500 ATCAGGAGGAATTCTTTCCTTATCATGGATTGTGGCCTTTACATTTTCTATCTTATCTGA 179441
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| ||||| || || ||||| || || || | ||||| | ||| |||||||||||
Sbjct 179440 GGGTTCAACTTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 179381
>seq4
Length=54856640
Score = 104 bits (114), Expect = 4e-17
Identities = 167/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | ||||| | || | ||| | ||||| ||| || ||| ||
Sbjct 17517746 TTTCTTAGCACCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTT 17517687
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| ||| | || |||| ||| || |||||||| || | | | || ||
Sbjct 17517686 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTGTTTGCTG 17517627
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || ||| |||| | ||| || || || |||||||| ||| ||||| ||
Sbjct 17517626 ATCAGGAGGAATTTCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 17517567
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| | || ||||| || || || || || | |||| | ||| |||||||||||
Sbjct 17517566 GGGTTCAGCCTCGAGAGTGATAGTCTTCCCCGTAAGGATTTTCACGAAAATCTGCATTTT 17517507
>seq101
Length=8127303
Score = 100 bits (110), Expect = 5e-16
Identities = 166/240 (69%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || ||||| ||||| || || | ||| | ||||| ||| || ||| ||
Sbjct 4241870 TTTCTTAGCACCACTGTGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTT 4241929
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
||| || || |||| | || |||| ||| || |||||||| || | ||| || ||
Sbjct 4241930 ATAGTCAGACAAAGTACAACAATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 4241989
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||||||||| || || || |||||||| | | |||||||
Sbjct 4241990 ATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTGTCATATCTGA 4242049
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||| | || || || || || || || | | ||||| ||||| |||||||||||
Sbjct 4242050 GAGTTCATCCTCGAGGGTGATAGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 4242109
>seq116
Length=6990774
Score = 95.1 bits (104), Expect = 2e-14
Identities = 165/240 (69%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | | || || || | ||| ||| ||| ||| || ||| ||
Sbjct 541741 TTTCTTAGCACCACCACGACTTCTCAACACAAGATGAAAAATAGACTCCTTTTGAATGTT 541682
Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952
|| || || |||| | | | || |||| ||| || |||||||| || | ||| || ||
Sbjct 541681 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 541622
Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012
||||| || |||||||| ||||| || || || ||||| || ||| ||||| ||
Sbjct 541621 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCCGA 541562
Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| ||| | | || || ||||| || || | | ||||| | || |||||||||||
Sbjct 541561 AGGTTCAGCCTTGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATTTT 541502
>seq8
Length=45331107
Score = 93.3 bits (102), Expect = 8e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901
|||||| ||||| || || | ||| | ||||| ||| || ||| || || || ||
Sbjct 31945667 ACCACCATGAAGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 31945608
Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961
| || ||| | || || | ||| || |||||| | || ||||| || || ||||| ||
Sbjct 31945607 CAGAGTACGTCCATCTTCTAGTTGCTTGCCAGCATAGATCAATCTTTGCTGATCAGGAGG 31945548
Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021
|||||||| ||||| || || || ||||| || | | |||||||| | ||| ||
Sbjct 31945547 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAAC 31945488
Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
| || || || || || | || | |||| |||| |||||||||||
Sbjct 31945487 CTGGAGGGTGATAGTCTTCTCCGTAAGAGTTTGTGTGAAAATCTGCATTTT 31945437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905105610058800
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