Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq54 91.5 1e-13
seq116 89.7 4e-13
seq134 84.2 2e-11
seq71 82.4 6e-11
>seq54
Length=16265076
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 107554 AAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTG 107613
||| ||| |||||||| ||||| | ||||| || ||||| ||| |||| | || |
Sbjct 5607227 AAAAGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGCTGAACCCT 5607168
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
|||||| | | ||||| |||||| ||||| |||||| | || ||||
Sbjct 5607167 CGGATACTACAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATC 5607108
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
|||| ||||| || | ||| || || || ||||| || | | || | |||||||
Sbjct 5607107 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTATTTTGTCTGACTACA 5607048
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771
||||||| ||||||||||| | || | |||||||||
Sbjct 5607047 ACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 5607010
>seq116
Length=6990774
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| |||||||| ||||| | | || || ||||| ||| || | | || ||
Sbjct 541502 AAAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCAAGGCTGAACCT 541561
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||||| | | | ||||| ||||| ||||| ||||| | || |||
Sbjct 541562 TCGGATACAATAGAAAACGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 541621
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
||||| ||||| || | ||| || || || ||||| || | || || | ||||||
Sbjct 541622 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 541681
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771
||||||||||||||||||| || || | |||||||||
Sbjct 541682 AACATTCAAAAGGAGTCTATTTTTCATCTTGTGTTGAGA 541720
>seq134
Length=5851302
Score = 84.2 bits (92), Expect = 2e-11
Identities = 163/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|||||||| ||||| || ||||| | || || || ||||| ||| |||| || |
Sbjct 3733157 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 3733216
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||||| | | | ||||| ||||| ||||| ||||| | || |||
Sbjct 3733217 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3733276
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
||||| ||||| || | ||| || || || ||||| || | || || | ||||||
Sbjct 3733277 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 3733336
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792
|||||||| ||||||||||| | || | ||||||||| | || || || ||| |||
Sbjct 3733337 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAA 3733396
Query 107793 A 107793
|
Sbjct 3733397 A 3733397
>seq71
Length=11673789
Score = 82.4 bits (90), Expect = 6e-11
Identities = 152/222 (68%), Gaps = 1/222 (0%)
Strand=Plus/Plus
Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602
||| |||| |||||||| || ||||| || || | || ||||| ||||| ||| | ||
Sbjct 72061 TAACAGGTC-AAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGA 72119
Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662
|||| || | || || ||| | || || ||||| ||||| |||||| |
Sbjct 72120 GGTGGAGCCTAGTGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCAT 72179
Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722
||| || |||||||| || || | ||| || || |||||||| || | | || |
Sbjct 72180 CCCCCACGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 72239
Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764
| ||||||||||| || || ||||| || || || ||||
Sbjct 72240 TCCTGACTACAACATCCAGAAAGAGTCAACCCTGTACCTGGT 72281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398863742518654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |