Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2 266 4e-66 seq74 190 2e-43 seq8 123 3e-23 >seq2 Length=71252344 Score = 266 bits (294), Expect = 4e-66 Identities = 612/919 (67%), Gaps = 7/919 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||||| |||| ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 67570526 TTATGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 67570467 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||||||| ||| || || ||||| || | || || | |||||| Sbjct 67570466 TTATTGGCAAACAGGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAA 67570410 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 |||||||| || ||||||||||| ||| ||| || || || | || || | ||| Sbjct 67570409 ACGCACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCCTGAAAACA 67570350 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| |||| |||||||| || ||||| | | ||||||||||| || ||| Sbjct 67570349 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCCTGCATGTCAGACAAATCG 67570290 Query 162307 TACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCAC 162366 ||||| | | | | | || || || | || | ||||| | |||||||| Sbjct 67570289 TACTTATGGCTAGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTAGCCCAG 67570230 Query 162367 AGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTTA 162426 || | || || || ||||| || || | || ||| ||||| |||| || ||| | Sbjct 67570229 AGATACTCATCAGGGCTATATGTGTCTTGCGCCCATTCCATAAACTTTTGGATTTTTTCA 67570170 Query 162427 TCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAAC 162486 | | ||| | || || || ||| | || | |||||| || || |||||||| Sbjct 67570169 TTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAA 67570110 Query 162487 ACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTCT 162546 | |||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 67570109 AGGGGTGTTTCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAACTTTCCATTA 67570050 Query 162547 ACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTCT 162606 | |||| | | | ||| ||||||| | |||| ||| | | || || || Sbjct 67570049 ATGACCTCATACCGCTTTTTCCACCTTTCTTCCTTATTGGATGGCATCCTCTCCGTTTCC 67569990 Query 162607 AGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGG 162666 || |||| ||| ||| ||| |||| | || || || || ||||| |||| Sbjct 67569989 AGGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATA 67569930 Query 162667 GGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGA 162726 ||||| || | || || ||||| || | || ||||| || | || | | |||| || Sbjct 67569929 GGAAAATCCATCCCACAAAGATTGATCAGGTACTTCCAATTTGCCCTCATTGCGTAGAGG 67569870 Query 162727 TCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCC 162786 |||| | ||||| || || ||||| || || |||||||| || || || || |||||| Sbjct 67569869 TCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCC 67569810 Query 162787 AACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAG 162846 || | |||| || |||||||| |||||| ||| | || |||||||| || | | Sbjct 67569809 AATCGGCTGGCCACGAAGACATTACTGAAACAGGAAGCAATGCCCATCACTGCAGCTAAA 67569750 Query 162847 AAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGA 162904 | ||| || | |||||| || || || | ||| || | ||||||||| |||| Sbjct 67569749 TAGGAATCC--TCGGATTTCCTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGA 67569692 Query 162905 TGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTA 162964 |||||||||||| || || | ||| || ||||| || || ||||||||||||||||||| Sbjct 67569691 TGGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACGATAGAATACGCTA 67569632 Query 162965 TGGGGAACTCAGCCTCCTC 162983 | || ||||| ||||| || Sbjct 67569631 TTGGAAACTCTGCCTCTTC 67569613 >seq74 Length=10970457 Score = 190 bits (210), Expect = 2e-43 Identities = 237/325 (73%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || | ||||| ||||| || | || Sbjct 8345471 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGAC 8345530 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||||| ||||| | || | || || ||| || Sbjct 8345531 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGATGGTGATGGTTGAGTTTTGGA 8345590 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||||| | |||||| || | ||||||||| || || || | Sbjct 8345591 GTCCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATAGC 8345650 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||||| ||||| |||||||| ||||| ||| || | |||||||| || || | Sbjct 8345651 TGTTGCTGAAGGTGGCTATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 8345710 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | ||||| |||||||||||||| |||||||| || |||| | Sbjct 8345711 TCAGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATTCAGCTGCT 8345770 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 8345771 CTCTTTCATCCTGGGTCACCACTTG 8345795 Score = 141 bits (156), Expect = 1e-28 Identities = 166/221 (75%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 |||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| | Sbjct 8342155 GTTTGTTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 8342211 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| | ||||| ||||| || || || ||||||||||||||||| ||||| || Sbjct 8342212 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTAGTAACAGATGTGGTCCCATTT 8342271 Query 171626 CGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684 | || ||| || || | ||||||||||| || || || | | ||| ||||| | || Sbjct 8342272 GGGTG-AGACACAGTCTCTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGGAGAT 8342330 Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || || ||||| | ||||| ||||||||||| || |||| Sbjct 8342331 CACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 8342371 >seq8 Length=45331107 Score = 123 bits (136), Expect = 3e-23 Identities = 398/607 (66%), Gaps = 17/607 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 6507419 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 6507478 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 6507479 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 6507538 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| || || Sbjct 6507539 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 6507598 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||| || ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 6507599 TGTACAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 6507658 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 6507659 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 6507716 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || || ||| || ||||| ||| || || || || | | Sbjct 6507717 CCCATAAGTATGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 6507775 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 6507776 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 6507830 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | || || ||||| || ||||| || Sbjct 6507831 TTCAAACACGAAGGGATTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTGA 6507890 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 |||||| | ||| || | || || || || | || || || | || |||| ||| Sbjct 6507891 GTCGCGGCGGTAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 6507948 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 | | | | || ||||| || |||||||| ||||| || || |||| ||| || | || | Sbjct 6507949 GTATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 6508008 Query 177480 GTAGGTA 177486 ||||| Sbjct 6508009 TGAGGTA 6508015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578412579145600