Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq2 266 4e-66
seq74 190 2e-43
seq8 123 3e-23
>seq2
Length=71252344
Score = 266 bits (294), Expect = 4e-66
Identities = 612/919 (67%), Gaps = 7/919 (1%)
Strand=Plus/Minus
Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126
||||||| |||| ||| || | |||||||| || || | ||| ||| | || |||
Sbjct 67570526 TTATGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 67570467
Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186
|| || || |||||||| ||| || || ||||| || | || || | ||||||
Sbjct 67570466 TTATTGGCAAACAGGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAA 67570410
Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246
|||||||| || ||||||||||| ||| ||| || || || | || || | |||
Sbjct 67570409 ACGCACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCCTGAAAACA 67570350
Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306
|| ||||| |||| |||||||| || ||||| | | ||||||||||| || |||
Sbjct 67570349 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCCTGCATGTCAGACAAATCG 67570290
Query 162307 TACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCAC 162366
||||| | | | | | || || || | || | ||||| | ||||||||
Sbjct 67570289 TACTTATGGCTAGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTAGCCCAG 67570230
Query 162367 AGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTTA 162426
|| | || || || ||||| || || | || ||| ||||| |||| || ||| |
Sbjct 67570229 AGATACTCATCAGGGCTATATGTGTCTTGCGCCCATTCCATAAACTTTTGGATTTTTTCA 67570170
Query 162427 TCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAAC 162486
| | ||| | || || || ||| | || | |||||| || || ||||||||
Sbjct 67570169 TTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAA 67570110
Query 162487 ACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTCT 162546
| |||| | | ||||| || |||| | || ||||| | | |||| |
Sbjct 67570109 AGGGGTGTTTCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAACTTTCCATTA 67570050
Query 162547 ACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTCT 162606
| |||| | | | ||| ||||||| | |||| ||| | | || || ||
Sbjct 67570049 ATGACCTCATACCGCTTTTTCCACCTTTCTTCCTTATTGGATGGCATCCTCTCCGTTTCC 67569990
Query 162607 AGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGG 162666
|| |||| ||| ||| ||| |||| | || || || || ||||| ||||
Sbjct 67569989 AGGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATA 67569930
Query 162667 GGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGA 162726
||||| || | || || ||||| || | || ||||| || | || | | |||| ||
Sbjct 67569929 GGAAAATCCATCCCACAAAGATTGATCAGGTACTTCCAATTTGCCCTCATTGCGTAGAGG 67569870
Query 162727 TCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCC 162786
|||| | ||||| || || ||||| || || |||||||| || || || || ||||||
Sbjct 67569869 TCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCC 67569810
Query 162787 AACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAG 162846
|| | |||| || |||||||| |||||| ||| | || |||||||| || | |
Sbjct 67569809 AATCGGCTGGCCACGAAGACATTACTGAAACAGGAAGCAATGCCCATCACTGCAGCTAAA 67569750
Query 162847 AAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGA 162904
| ||| || | |||||| || || || | ||| || | ||||||||| ||||
Sbjct 67569749 TAGGAATCC--TCGGATTTCCTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGA 67569692
Query 162905 TGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTA 162964
|||||||||||| || || | ||| || ||||| || || |||||||||||||||||||
Sbjct 67569691 TGGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACGATAGAATACGCTA 67569632
Query 162965 TGGGGAACTCAGCCTCCTC 162983
| || ||||| ||||| ||
Sbjct 67569631 TTGGAAACTCTGCCTCTTC 67569613
>seq74
Length=10970457
Score = 190 bits (210), Expect = 2e-43
Identities = 237/325 (73%), Gaps = 0/325 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
||||||| || || |||| | || || || || || | ||||| ||||| || | ||
Sbjct 8345471 CATAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGAC 8345530
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|||| |||| ||||| ||||||| |||||| ||||| | || | || || ||| ||
Sbjct 8345531 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGATGGTGATGGTTGAGTTTTGGA 8345590
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || || |||||||||| | |||||| || | ||||||||| || || || |
Sbjct 8345591 GTCCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATAGC 8345650
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
| | |||||| ||||| |||||||| ||||| ||| || | |||||||| || || |
Sbjct 8345651 TGTTGCTGAAGGTGGCTATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 8345710
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| | ||||| | | ||||| |||||||||||||| |||||||| || |||| |
Sbjct 8345711 TCAGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATTCAGCTGCT 8345770
Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095
| ||||| || || || ||||| ||
Sbjct 8345771 CTCTTTCATCCTGGGTCACCACTTG 8345795
Score = 141 bits (156), Expect = 1e-28
Identities = 166/221 (75%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565
|||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| |
Sbjct 8342155 GTTTGTTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 8342211
Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625
||||| ||| | ||||| ||||| || || || ||||||||||||||||| ||||| ||
Sbjct 8342212 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTAGTAACAGATGTGGTCCCATTT 8342271
Query 171626 CGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684
| || ||| || || | ||||||||||| || || || | | ||| ||||| | ||
Sbjct 8342272 GGGTG-AGACACAGTCTCTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGGAGAT 8342330
Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725
|| || ||||| | ||||| ||||||||||| || ||||
Sbjct 8342331 CACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 8342371
>seq8
Length=45331107
Score = 123 bits (136), Expect = 3e-23
Identities = 398/607 (66%), Gaps = 17/607 (3%)
Strand=Plus/Plus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | |||||| |||| | || || | | |
Sbjct 6507419 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 6507478
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | ||| | || | ||||
Sbjct 6507479 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 6507538
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || || || || || |||| ||| || || | ||||| | || |||| || ||
Sbjct 6507539 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 6507598
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
||| || ||||| || || || ||| |||| | || || ||||| | ||||| ||||
Sbjct 6507599 TGTACAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 6507658
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
|||| | ||||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 6507659 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 6507716
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || || ||| || ||||| ||| || || || || | |
Sbjct 6507717 CCCATAAGTATGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 6507775
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || |||||||| || ||||| |||||||| || ||
Sbjct 6507776 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 6507830
Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361
||| | || || | | | || | ||| | | || || ||||| || ||||| ||
Sbjct 6507831 TTCAAACACGAAGGGATTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTGA 6507890
Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419
|||||| | ||| || | || || || || | || || || | || |||| |||
Sbjct 6507891 GTCGCGGCGGTAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 6507948
Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479
| | | | || ||||| || |||||||| ||||| || || |||| ||| || | || |
Sbjct 6507949 GTATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 6508008
Query 177480 GTAGGTA 177486
|||||
Sbjct 6508009 TGAGGTA 6508015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578412579145600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |