Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq11 116 2e-21 seq9 109 4e-19 seq88 107 1e-18 seq59 102 5e-17 seq32 100 2e-16 seq86 82.4 5e-11 seq34 82.4 5e-11 >seq11 Length=43820709 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || | | ||||| || || ||| |||||| || ||||||| || ||| Sbjct 25320731 CCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGAG 25320790 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| ||||||||| || | || Sbjct 25320791 AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 25320850 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| | ||||| |||||| ||| | ||| ||| |||||| || | || || Sbjct 25320851 ATACCCTTCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAATGGTGTCACTGGGCTCGAC 25320909 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||||| | || || |||||||||||||| Sbjct 25320910 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957 >seq9 Length=44311105 Score = 109 bits (120), Expect = 4e-19 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| ||| || || |||||||| || ||| Sbjct 14505871 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 14505812 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||| || | || |||| ||||| |||||||| |||| || |||||| || | || Sbjct 14505811 CGTG--CGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGGG 14505754 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||| ||||| |||||| ||| | ||| ||| |||||| || | || || Sbjct 14505753 ATACCTTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAGTGGTGTCACTGGGCTCGAC 14505695 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 14505694 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||| | || || ||| |||||| || |||||||| || ||| Sbjct 3708446 CCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 3708387 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||||| | || |||| ||||| |||||||| |||| || |||||| || | || Sbjct 3708386 AGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGGG 3708327 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| ||| || || | || || Sbjct 3708326 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAGTGGTATCACTGGGCTCGAC 3708268 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || | || || | || || ||||||||||| || Sbjct 3708267 CTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220 Score = 100 bits (110), Expect = 2e-16 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||| || || || | ||||| || || ||| |||||| || |||||||| || ||| Sbjct 19097353 CCACTTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTGAG 19097294 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||| | | || |||| ||||| | |||||| |||| ||||||||| || | || Sbjct 19097293 CGTGAGGC--CATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 19097236 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | || || Sbjct 19097235 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAATGGTGTCACTGGGCTCGAC 19097177 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 19097176 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129 >seq88 Length=9397244 Score = 107 bits (118), Expect = 1e-18 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || | | |||| | || || ||| |||||| || |||||||| || ||| Sbjct 1074121 CCACCTCGCAGGTGCAGCACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 1074180 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || |||| ||||| || ||||| |||| | |||||||||| || Sbjct 1074181 AGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGGG 1074240 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| | || |||| || | |||||| || | || || Sbjct 1074241 ATACCCTCCTTGTCTTGAATTTT-GGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 1074299 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGC 33747 | || ||||| || || || || | || || |||||||||||| Sbjct 1074300 CTTAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 1074345 >seq59 Length=14671897 Score = 102 bits (112), Expect = 5e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 33526 CCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGT 33585 || ||||| || | ||||| || ||| || |||||| || |||||||| || || || Sbjct 11745349 CCCCTCAAGCGCAGGACCAAGTGCAGAATGGACTCTTTCTGGATGTTGTAGTCAGACAGG 11745290 Query 33586 GTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACA 33645 ||||| | || |||| ||||| |||||||| ||||| | |||||| || | || | Sbjct 11745289 GTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGAGGGATG 11745230 Query 33646 CCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTC 33704 ||||| ||||| || || || | |||| ||| |||||| || | || || || Sbjct 11745229 CCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTC 11745171 Query 33705 AACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || |||| || | || || || ||||||||||| Sbjct 11745170 AAGGGTGATGGTCTTACTGGTAAGGGTCTTCACGAAGATCTGCAT 11745126 >seq32 Length=21366645 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTC----TTTTTGTATGTTGTAATC 33578 ||||||| | | || ||||| || || ||| ||| ||| || |||||||| || Sbjct 21077894 CCACCTCATAGATATAGCACCAGGTGCAGGGTGGACTCCAGATTTCTGGATGTTGTAGTC 21077835 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 ||||| ||||| | || |||| ||||| |||||||| || | || |||||| || | Sbjct 21077834 TGAGAGAGTGCGGCCATCCTCCATCTGTTTGCCGGCAAAGATTAGACACTGCTGGTCAGG 21077775 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCA-CGGTGTCGCTTGATT 33697 || | |||||||||||| |||||| | || |||| ||| |||||| || || | Sbjct 21077774 TGGGATACCTTCTTTGTCTTGAATTTT-GGCTTTGACATTCTCAGTGGTGTCACTGGACT 21077716 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| | || || || | | || |||||||||| ||| Sbjct 21077715 CGACCTCAAGGGTGATGATCTTGCCCGTGAGTATCTTCACAAAGATCTACAT 21077664 >seq86 Length=9530769 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| |||| | | |||||||| || ||||| |||| | || || Sbjct 8872722 CACCAGGTGCAGGGTGGACTCTCT--GGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTC 8872665 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| | |||||| |||| | ||||||| || | || | ||| || ||||| Sbjct 8872664 CAGCTGTTTGCTGGCAAACATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTG 8872605 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| ||| | | | ||| |||||| || | | || |||| |||| || | Sbjct 8872604 AATTTTGGCTTTGA-CGTTCTCAATGGTGTCACTGGGCACGACCTCAAGGATGATGGTCT 8872546 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| | || || |||||||||||||| Sbjct 8872545 TGCCTGTGAGGGTCTTCACAAAGATCTGCAT 8872515 >seq34 Length=20716200 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| || ||| || |||||||| || ||||| ||||| | || ||||| ||| Sbjct 14078298 TGCAGGGTGGACTGTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCATCCAACTGT 14078357 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || | |||||| |||| | ||||||| || | | ||| || ||| | |||||| Sbjct 14078358 TTGCTGGCAAATATCAGATGCTGCTGGTCAGATAGGATACCCTCCTTGCCTTGAATTTTG 14078417 Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| | ||| ||| ||||| || | || || |||| ||||| || || || || Sbjct 14078418 GCTTTGA-CATTCTCAATAGTGTCACTGGCTTTAACCTCAAGGGTGATGGTCTTGCCCGT 14078476 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | | || |||||||||||||| Sbjct 14078477 GAGGTTCTTCACAAAGATCTGCAT 14078500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328693239669120