Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9 95.1 1e-14 seq59 89.7 5e-13 seq27 86.0 6e-12 seq132 82.4 7e-11 seq33 82.4 7e-11 >seq9 Length=44311105 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| || ||||| | |||||||||||||||||| ||| ||||| || ||||| | Sbjct 1894393 TGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 1894452 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||||||| || | |||||| ||||||| ||||| Sbjct 1894453 TGCTCTTCCGATTACAGGAGTCTTTATAGAGCATATACGG 1894492 >seq59 Length=14671897 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| || ||| || Sbjct 11745344 CAAGCGCAGGACCAAGTGCAGAATGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 11745285 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| |||| | |||| | | ||| || || ||||| |||||||| Sbjct 11745284 CCCATCTTCCAGCTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTC 11745225 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| || | | || | || || | ||||| || || | || Sbjct 11745224 CTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 11745165 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||| || || || || | ||| |||||||| Sbjct 11745164 GATGGTCTTACTGGTAAGGGTCTTCACGAAGATCTGCAT 11745126 >seq27 Length=24139186 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||||| || |||| || | | | |||||||| || || |||||||| | ||| || Sbjct 5858138 CAAGCACAGGACCACGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCG 5858079 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||||| |||||||| || | | |||| | ||| || || ||||| |||||||| Sbjct 5858078 CCCGTCTTCCAGCTGTTTCCCAGCAAAGATCGATCTCTGCTGCTCAGGAGGGATGCCTTC 5858019 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || ||| || | | ||| | | | || | |||| || |||| || Sbjct 5858018 TTTGTCCTGGATCTTTGCCTTGATGTTTTCAATAATGTCACTGGGCTGGACCTCGAGGGT 5857959 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGC 132121 | || || ||||||||||| || ||||| |||||| Sbjct 5857958 GATGGTCTTGCCAGTCAGAGTCTTCATGAAGATCTGC 5857922 >seq132 Length=5918258 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 47196 AATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAA 47255 ||||| ||||| |||||| | |||||||| || || || ||||| ||||| || |||||| Sbjct 989841 AATCCTTTTGATTTTATGGAAAACATTTCTCTAGAAGGAAAAACAAATTTCTTTGAGAAA 989900 Query 47256 CGAGTCGGAGAGTATAAGCGCTT 47278 ||||| ||||||| ||||||| Sbjct 989901 CGAGTTTCAGAGTATCAGCGCTT 989923 >seq33 Length=21137282 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | |||||||| || ||||||||||| | || | | Sbjct 15373744 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCA 15373685 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| || || ||||| |||||||| ||| Sbjct 15373684 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 15373625 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | ||| | || || | |||||||| || | ||| | Sbjct 15373624 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATG 15373565 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || || | ||| |||||||| Sbjct 15373564 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15373530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476595197778960