Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq9 95.1 1e-14
seq59 89.7 5e-13
seq27 86.0 6e-12
seq132 82.4 7e-11
seq33 82.4 7e-11
>seq9
Length=44311105
Score = 95.1 bits (104), Expect = 1e-14
Identities = 81/100 (81%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562
|||||| || ||||| | |||||||||||||||||| ||| ||||| || ||||| |
Sbjct 1894393 TGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 1894452
Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
|||| |||||||| || | |||||| ||||||| |||||
Sbjct 1894453 TGCTCTTCCGATTACAGGAGTCTTTATAGAGCATATACGG 1894492
>seq59
Length=14671897
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|||||||| ||||| || | | |||||||| || ||||||||||| || ||| ||
Sbjct 11745344 CAAGCGCAGGACCAAGTGCAGAATGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 11745285
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| |||||| |||||||| |||| | |||| | | ||| || || ||||| ||||||||
Sbjct 11745284 CCCATCTTCCAGCTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTC 11745225
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || || ||| || | | || | || || | ||||| || || | ||
Sbjct 11745224 CTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 11745165
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || |||| || || || || | ||| ||||||||
Sbjct 11745164 GATGGTCTTACTGGTAAGGGTCTTCACGAAGATCTGCAT 11745126
>seq27
Length=24139186
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||||| || |||| || | | | |||||||| || || |||||||| | ||| ||
Sbjct 5858138 CAAGCACAGGACCACGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCG 5858079
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| ||||| |||||||| || | | |||| | ||| || || ||||| ||||||||
Sbjct 5858078 CCCGTCTTCCAGCTGTTTCCCAGCAAAGATCGATCTCTGCTGCTCAGGAGGGATGCCTTC 5858019
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
||| || || ||| || | | ||| | | | || | |||| || |||| ||
Sbjct 5858018 TTTGTCCTGGATCTTTGCCTTGATGTTTTCAATAATGTCACTGGGCTGGACCTCGAGGGT 5857959
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGC 132121
| || || ||||||||||| || ||||| ||||||
Sbjct 5857958 GATGGTCTTGCCAGTCAGAGTCTTCATGAAGATCTGC 5857922
>seq132
Length=5918258
Score = 82.4 bits (90), Expect = 7e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 47196 AATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAA 47255
||||| ||||| |||||| | |||||||| || || || ||||| ||||| || ||||||
Sbjct 989841 AATCCTTTTGATTTTATGGAAAACATTTCTCTAGAAGGAAAAACAAATTTCTTTGAGAAA 989900
Query 47256 CGAGTCGGAGAGTATAAGCGCTT 47278
||||| ||||||| |||||||
Sbjct 989901 CGAGTTTCAGAGTATCAGCGCTT 989923
>seq33
Length=21137282
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| |||| || | | | |||||||| || ||||||||||| | || | |
Sbjct 15373744 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCA 15373685
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| ||||| || || | | |||| || | ||| || || ||||| |||||||| |||
Sbjct 15373684 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 15373625
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || |||| | ||| | || || | |||||||| || | ||| |
Sbjct 15373624 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATG 15373565
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || || ||||| || || | ||| ||||||||
Sbjct 15373564 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15373530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476595197778960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |