Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq67 111 5e-21 seq258 107 6e-20 seq244 104 7e-19 seq8 102 3e-18 seq216 98.7 3e-17 seq213 98.7 3e-17 seq90 98.7 3e-17 seq29 98.7 3e-17 seq1 98.7 3e-17 >seq67 Length=12849963 Score = 111 bits (122), Expect = 5e-21 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1223271 ATGGCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCA 1223212 Query 2826 ACCCCGGGCTT 2836 | ||| || || Sbjct 1223211 ATCCCAGGTTT 1223201 >seq258 Length=193273 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 76806 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 76865 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 76866 TCCCGGGTTTCGGC 76879 >seq244 Length=375362 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 218540 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 218599 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 218600 CCGGGTTTCGGC 218611 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 81084 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 81143 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 81144 CCGGGTTTCGGC 81155 >seq8 Length=45331107 Score = 102 bits (112), Expect = 3e-18 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 42277961 GCTGAAATAGCTCAGTTGGAAGAGCATTAGACTGAAGATCTAAAGGTCCTTGGTTCAATC 42278020 Query 2829 CCGGGCTTCAG 2839 || || ||||| Sbjct 42278021 CCAGGTTTCAG 42278031 >seq216 Length=938135 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 605168 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 605109 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 605108 CCGGGTTTCGGC 605097 >seq213 Length=973467 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct 715930 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCGAAAGGTCCCTGGTTCGATC 715871 Query 2829 CCGGGCTTCAGC 2840 ||| | ||| || Sbjct 715870 CCGAGTTTCTGC 715859 >seq90 Length=9212255 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 7729507 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7729566 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7729567 CCGGGTTTCGGC 7729578 >seq29 Length=23066823 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4257658 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4257599 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4257598 CCGGGTTTCGGC 4257587 >seq1 Length=72162052 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 53251046 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 53250987 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 53250986 CCGGGTTTCGGC 53250975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849134368470