Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq74 266 4e-66
seq22 192 7e-44
seq12 154 2e-32
seq38 145 9e-30
seq18 113 5e-20
>seq74
Length=10970457
Score = 266 bits (294), Expect = 4e-66
Identities = 252/322 (78%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128
|| ||||||||||||||||| || | || |||||| ||||| || ||| | | ||||||
Sbjct 8345795 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGAATACGCCTGCTTCCTTAAGATGCTCT 8345736
Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188
||||| ||| | | || || |||||||| || |||||||||| || | | |||
Sbjct 8345735 CTGCAAACTACCTACGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 8345676
Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248
|| ||||| || || ||||| | | ||||||||||||||||| || |||||||||
Sbjct 8345675 GAAAACATAGCCACCTTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTATAAGGAC 8345616
Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308
||| | ||||| |||||||| ||||||||||||||||||||||| | ||||||||||||
Sbjct 8345615 AAGTTGAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCATCTGGAATACCACC 8345556
Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368
| ||||| || ||||| |||| || ||||| || |||||||| | |||||| |||||
Sbjct 8345555 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCA 8345496
Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390
|| ||||||||||||||||
Sbjct 8345495 GGAACAGCCTGCCTCACCCTCT 8345474
>seq22
Length=27210278
Score = 192 bits (212), Expect = 7e-44
Identities = 272/379 (72%), Gaps = 4/379 (1%)
Strand=Plus/Plus
Query 146770 TCCTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAA 146829
|||||||| |||| |||| || | |||||| | | ||| || || | |||
Sbjct 26912447 TCCTAAACAGCCATTTCCATTTTAATAGTTGGGTGCAGATTGTACCCTTCAACCTTAAAG 26912506
Query 146830 TCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAG 146889
||||| || |||| || || || | ||| || | | |||||||||||| |||||
Sbjct 26912507 TCTTCAGCTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAA 26912566
Query 146890 GGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGT 146947
|||| | | | || ||| |||||||||||||| ||||| | ||| || ||||| | |
Sbjct 26912567 GGTCTGCGTTCTCACTG--AAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATAT 26912624
Query 146948 GCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCA 147007
| || || |||| | || ||||| || || ||||| ||||| || | ||| | ||
Sbjct 26912625 GTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGATCA 26912684
Query 147008 TGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCG 147067
|||| |||||||| | |||||||| |||||||| || | || ||||||| ||| | |
Sbjct 26912685 TGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCTTG 26912744
Query 147068 ACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGT 147127
| |||||||||||||| || || ||||| | || ||||||| |||||||| ||| |
Sbjct 26912745 ATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGAGGGCAT 26912804
Query 147128 GGCACGGCGGCAGCGCCAT 147146
|||| || |||| ||||||
Sbjct 26912805 GGCATGGGGGCAACGCCAT 26912823
>seq12
Length=39782659
Score = 154 bits (170), Expect = 2e-32
Identities = 133/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | |||||| |||||||| | ||||||||| ||||||||
Sbjct 25689310 CTTCAGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 25689251
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
|| || || ||||||||||| || || ||||| ||||||||||| || ||||| ||||
Sbjct 25689250 AGGCACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTT 25689191
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
||||||| |||||||| ||| ||||| || |||||||||||
Sbjct 25689190 CACCACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 25689146
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342
|||||||| || |||||||||||||| || ||||| |||| ||| || | ||||
Sbjct 25685081 GCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCG 25685022
Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402
||||| ||| | | ||||| || |||| || | ||| |||||||| |||||||
Sbjct 25685021 GAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 25684962
Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435
|||| || ||||| |||| | ||||| |||
Sbjct 25684961 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCC 25684929
>seq38
Length=19171412
Score = 145 bits (160), Expect = 9e-30
Identities = 131/167 (78%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| ||||||||| ||||||||||||
Sbjct 18494165 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 18494224
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| || || ||||| || | ||| ||||| |||||||| || ||||
Sbjct 18494225 TGCCCCAAGCTGAGAACCA------------TGACCCAGACATCAAGGAGCACGTGAACT 18494272
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||||||||| ||||| | || |||||||||| || |||
Sbjct 18494273 CCCTGGGGGAAAAGCTGAAGACTTTCAGGCTGAGGCTGCGACGCTGT 18494319
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| || || || |||||||| |||||||||||||| || || || ||||||
Sbjct 18496496 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 18496555
Query 178522 TAGAAGCTTACATGACAA 178539
||||||| ||||||||||
Sbjct 18496556 TAGAAGCCTACATGACAA 18496573
>seq18
Length=30262601
Score = 113 bits (124), Expect = 5e-20
Identities = 525/828 (63%), Gaps = 33/828 (4%)
Strand=Plus/Plus
Query 8603 CCCTGTGGTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAG 8662
||||| ||| || |||||||| | | || || | ||||||| ||||| | |
Sbjct 8917280 CCCTGCTGTATTCCCTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGTTGGTGA 8917339
Query 8663 TCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCC 8722
|||||||||| |||||||||||| | || | ||||| |||| |||| |||||||||||
Sbjct 8917340 TCCTCATAAAATACAAGAGGCTCCGAATTCTCACCAATATCTACCTGCTCAACCTGGCCA 8917399
Query 8723 TTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAA 8782
|| |||||||| | | |||||||| || || ||||| |||| || | |||
Sbjct 8917400 TTTCCGACCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCACTATA--TCATGTGGA- 8917456
Query 8783 CTGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGG 8842
||| |||| | ||| |||||||||| | | ||| ||| | ||
Sbjct 8917457 ---GTGACTGGGTTTTTGGCCATGGCATGTGTAAGGTCGTCTCGGGGTTTTATTTCACGG 8917513
Query 8843 CACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTG 8902
||||| | || || | || ||||||||| |||| | |||||||| || || |||
Sbjct 8917514 GCTTGTACGGAGAGATCTTTTTCATCATCCTGCTGACGATCGACAGGTACCTGGCCATTG 8917573
Query 8903 TGTACGCGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCC 8962
| | || ||| | | | | |||| || | | || || || ||||| ||
Sbjct 8917574 TCCATGCTGTGTTTGCCCTTCGAGCCCGCACTGTCACTTTTGGTGTCATCACCAGCATCG 8917633
Query 8963 TGGCCTGGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATA 9022
| ||||| ||||| ||| | | | | | || || |||||||| | || || | |
Sbjct 8917634 TCACCTGGGGCCTGGCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAGGAGACCGAAA 8917693
Query 9023 ATGCCACAGGCAAGGGGGTC-TGCCAAGCCTCC-TACACAGACTTT------------TG 9068
| | |||||| | | ||| ||| ||| |||| | ||
Sbjct 8917694 ACGTTCTT--CAAGGGTCTTATTGCAACCCTGTGTACCCAGAGGATGGAGCACAAAGCTG 8917751
Query 9069 GAAGGGGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCAT 9128
|||| | ||| | || | | | | | ||| || ||| |||| | ||
Sbjct 8917752 GAAGCATTTCTATGCTCTGAGAGTAAACGTCTTGGTTCTCGCTCTCCCTCTGCTCGTTAT 8917811
Query 9129 GGCCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAAA 9188
|||| |||||||| ||||||||| || || | | || ||| | | |||
Sbjct 8917812 GGCCATCTGCTACGCAGGAATCATCAAAACACTGCTGAGGTGCCCCAATAA----AAAAA 8917867
Query 9189 CCTGCACG-CCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCC 9247
| || | || || ||||||||| |||| ||||| | | ||| | || |||| |
Sbjct 8917868 AGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACAC 8917927
Query 9248 CCTACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTG 9307
|||||||| | ||| || | | |||| |||| || | ||||| ||||||
Sbjct 8917928 CCTACAACCTGGCTCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTA 8917987
Query 9308 AAGCGCGGCGCAGGG---TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCC 9364
| || | ||| || ||||| ||||||| ||||| | || ||||||||| | |||
Sbjct 8917988 A---GCAGAGCAAGGATCTGGACCTGGCCCTACTGGTGACACAGGTGATCGCCTACTCCC 8918044
Query 9365 ACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
|||||||||| ||||| || |||||||| ||||| || || | |||||
Sbjct 8918045 ACTGCTGCGTTAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCC 8918092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583468409390400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |