Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq74 266 4e-66 seq22 192 7e-44 seq12 154 2e-32 seq38 145 9e-30 seq18 113 5e-20 >seq74 Length=10970457 Score = 266 bits (294), Expect = 4e-66 Identities = 252/322 (78%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||||| ||||| || ||| | | |||||| Sbjct 8345795 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGAATACGCCTGCTTCCTTAAGATGCTCT 8345736 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| ||| | | || || |||||||| || |||||||||| || | | ||| Sbjct 8345735 CTGCAAACTACCTACGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 8345676 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || ||||| || || ||||| | | ||||||||||||||||| || ||||||||| Sbjct 8345675 GAAAACATAGCCACCTTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTATAAGGAC 8345616 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||| | ||||| |||||||| ||||||||||||||||||||||| | |||||||||||| Sbjct 8345615 AAGTTGAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCATCTGGAATACCACC 8345556 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| | |||||| ||||| Sbjct 8345555 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCA 8345496 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || |||||||||||||||| Sbjct 8345495 GGAACAGCCTGCCTCACCCTCT 8345474 >seq22 Length=27210278 Score = 192 bits (212), Expect = 7e-44 Identities = 272/379 (72%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 146770 TCCTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAA 146829 |||||||| |||| |||| || | |||||| | | ||| || || | ||| Sbjct 26912447 TCCTAAACAGCCATTTCCATTTTAATAGTTGGGTGCAGATTGTACCCTTCAACCTTAAAG 26912506 Query 146830 TCTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAG 146889 ||||| || |||| || || || | ||| || | | |||||||||||| ||||| Sbjct 26912507 TCTTCAGCTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAA 26912566 Query 146890 GGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGT 146947 |||| | | | || ||| |||||||||||||| ||||| | ||| || ||||| | | Sbjct 26912567 GGTCTGCGTTCTCACTG--AAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATAT 26912624 Query 146948 GCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCA 147007 | || || |||| | || ||||| || || ||||| ||||| || | ||| | || Sbjct 26912625 GTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGATCA 26912684 Query 147008 TGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCG 147067 |||| |||||||| | |||||||| |||||||| || | || ||||||| ||| | | Sbjct 26912685 TGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCTTG 26912744 Query 147068 ACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGT 147127 | |||||||||||||| || || ||||| | || ||||||| |||||||| ||| | Sbjct 26912745 ATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGAGGGCAT 26912804 Query 147128 GGCACGGCGGCAGCGCCAT 147146 |||| || |||| |||||| Sbjct 26912805 GGCATGGGGGCAACGCCAT 26912823 >seq12 Length=39782659 Score = 154 bits (170), Expect = 2e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 25689310 CTTCAGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 25689251 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| || || ||||| ||||||||||| || ||||| |||| Sbjct 25689250 AGGCACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTT 25689191 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| ||||| || ||||||||||| Sbjct 25689190 CACCACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 25689146 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| || |||||||||||||| || ||||| |||| ||| || | |||| Sbjct 25685081 GCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCG 25685022 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | ||||| || |||| || | ||| |||||||| ||||||| Sbjct 25685021 GAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 25684962 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || ||||| |||| | ||||| ||| Sbjct 25684961 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCC 25684929 >seq38 Length=19171412 Score = 145 bits (160), Expect = 9e-30 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 18494165 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 18494224 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| || | ||| ||||| |||||||| || |||| Sbjct 18494225 TGCCCCAAGCTGAGAACCA------------TGACCCAGACATCAAGGAGCACGTGAACT 18494272 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| ||||| | || |||||||||| || ||| Sbjct 18494273 CCCTGGGGGAAAAGCTGAAGACTTTCAGGCTGAGGCTGCGACGCTGT 18494319 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || |||||| Sbjct 18496496 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 18496555 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 18496556 TAGAAGCCTACATGACAA 18496573 >seq18 Length=30262601 Score = 113 bits (124), Expect = 5e-20 Identities = 525/828 (63%), Gaps = 33/828 (4%) Strand=Plus/Plus Query 8603 CCCTGTGGTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAG 8662 ||||| ||| || |||||||| | | || || | ||||||| ||||| | | Sbjct 8917280 CCCTGCTGTATTCCCTGGTGTTCATCGTGGGCCTCTTGGGCAATGTGTTGGTGTTGGTGA 8917339 Query 8663 TCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCC 8722 |||||||||| |||||||||||| | || | ||||| |||| |||| ||||||||||| Sbjct 8917340 TCCTCATAAAATACAAGAGGCTCCGAATTCTCACCAATATCTACCTGCTCAACCTGGCCA 8917399 Query 8723 TTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAA 8782 || |||||||| | | |||||||| || || ||||| |||| || | ||| Sbjct 8917400 TTTCCGACCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCACTATA--TCATGTGGA- 8917456 Query 8783 CTGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGG 8842 ||| |||| | ||| |||||||||| | | ||| ||| | || Sbjct 8917457 ---GTGACTGGGTTTTTGGCCATGGCATGTGTAAGGTCGTCTCGGGGTTTTATTTCACGG 8917513 Query 8843 CACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTG 8902 ||||| | || || | || ||||||||| |||| | |||||||| || || ||| Sbjct 8917514 GCTTGTACGGAGAGATCTTTTTCATCATCCTGCTGACGATCGACAGGTACCTGGCCATTG 8917573 Query 8903 TGTACGCGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCC 8962 | | || ||| | | | | |||| || | | || || || ||||| || Sbjct 8917574 TCCATGCTGTGTTTGCCCTTCGAGCCCGCACTGTCACTTTTGGTGTCATCACCAGCATCG 8917633 Query 8963 TGGCCTGGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATA 9022 | ||||| ||||| ||| | | | | | || || |||||||| | || || | | Sbjct 8917634 TCACCTGGGGCCTGGCAGTGCTAGCAGCTCTCCCTGAATTTATCTTCCAGGAGACCGAAA 8917693 Query 9023 ATGCCACAGGCAAGGGGGTC-TGCCAAGCCTCC-TACACAGACTTT------------TG 9068 | | |||||| | | ||| ||| ||| |||| | || Sbjct 8917694 ACGTTCTT--CAAGGGTCTTATTGCAACCCTGTGTACCCAGAGGATGGAGCACAAAGCTG 8917751 Query 9069 GAAGGGGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCAT 9128 |||| | ||| | || | | | | | ||| || ||| |||| | || Sbjct 8917752 GAAGCATTTCTATGCTCTGAGAGTAAACGTCTTGGTTCTCGCTCTCCCTCTGCTCGTTAT 8917811 Query 9129 GGCCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAAA 9188 |||| |||||||| ||||||||| || || | | || ||| | | ||| Sbjct 8917812 GGCCATCTGCTACGCAGGAATCATCAAAACACTGCTGAGGTGCCCCAATAA----AAAAA 8917867 Query 9189 CCTGCACG-CCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCC 9247 | || | || || ||||||||| |||| ||||| | | ||| | || |||| | Sbjct 8917868 AGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTGTTTTTCATTTTCTGGACAC 8917927 Query 9248 CCTACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTG 9307 |||||||| | ||| || | | |||| |||| || | ||||| |||||| Sbjct 8917928 CCTACAACCTGGCTCTCCTTCTCTATACCTTTCAAGCCACCTTGTTTGGATATGACTGTA 8917987 Query 9308 AAGCGCGGCGCAGGG---TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCC 9364 | || | ||| || ||||| ||||||| ||||| | || ||||||||| | ||| Sbjct 8917988 A---GCAGAGCAAGGATCTGGACCTGGCCCTACTGGTGACACAGGTGATCGCCTACTCCC 8918044 Query 9365 ACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||| ||||| || |||||||| ||||| || || | ||||| Sbjct 8918045 ACTGCTGCGTTAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTTCC 8918092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583468409390400