Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq37 232 5e-56 seq22 134 1e-26 seq12 107 2e-18 seq132 86.0 5e-12 >seq37 Length=19344684 Score = 232 bits (256), Expect = 5e-56 Identities = 509/758 (67%), Gaps = 16/758 (2%) Strand=Plus/Minus Query 43838 TTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTG 43897 |||||||| ||| |||| || ||||| || || | || ||||| |||||||| ||| Sbjct 212052 TTTATATCCCACGTTCTGGCTTTCTTTGCAGCAAGTTATGGCATAGTAAATGAAAACTTG 211993 Query 43898 GTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957 || || ||| ||||||||||| | ||||||| | ||||| ||||| || ||| Sbjct 211992 GTGGAGCGATTTAGCCAAGAAGTTCAGATCACAGAAGCCCACTGTTTCTATGGCTTCCAA 211933 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAA 44017 || ||||| |||| || ||||| ||||| || ||||| || || || || ||||| ||| Sbjct 211932 ATGGCCATGAAAAACATACATTCTGAAATATATAGTCTCCTTATTGACACTTACATAAAA 211873 Query 44018 GATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACAT 44077 ||| |||| | | | | || ||||| || ||||| | ||| | || | Sbjct 211872 GATCCCAACGAAAGGGAATTTCTCTTCAATGCTATTGAAACGATGCCTTGTGTCAAGAAG 211813 Query 44078 AAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTT 44134 || ||||| |||||| | ||| | | | | | | | | ||| |||| || Sbjct 211812 AAGGCAGATTGGGCCTTGCTCTGGGTTGGGGACAAAGAGGCTACCTATGGTGAACACGTT 211753 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 | || ||||| | ||||||||||| |||||||| || || ||||| ||||||| ||| Sbjct 211752 GCAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 211693 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||||||||| |||||||||| | || ||||| ||||| | | | | ||| Sbjct 211692 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTACTGGCAGAGAT 211633 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCT 44314 || || ||||| || ||||| |||||| || | | | | | || | || || || Sbjct 211632 GAGGGTTTACACTGTGATTTCGCTTGCCTGATGTTCAAACACCAAGTACAC---AAACCA 211576 Query 44315 TCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATG 44374 ||| ||| | | | ||| || || | || || ||| ||||| || || | Sbjct 211575 TCAGAGGAGAGAGTAAGAGAAATAATTATCAGTGCTGTTCGGATGGAACAGGAGTTCCTT 211516 Query 44375 ACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATAT 44433 || || || ||||| || | || || ||||| || || | | ||||| ||||| || Sbjct 211515 ACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCAC-TCTAATGAAGCAATACAT 211457 Query 44434 TGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----G 44489 ||| | | ||||| | | | |||||||||||| | | || | || | Sbjct 211456 TGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTT----TTAGCAGGGTTTTCAGAG 211401 Query 44490 TACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTG 44549 || | || || ||||| |||||||| |||||||| ||||||| || || ||||| |||| Sbjct 211400 TAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAACACTAACTTCTTTG 211341 Query 44550 AAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || | || || | |||||| | ||||| || ||| Sbjct 211340 AGAAGAGAGTAGGTAAGTATCAGAGGATGGGAGTGATG 211303 >seq22 Length=27210278 Score = 134 bits (148), Expect = 1e-26 Identities = 181/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 41025 TGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTT 41084 ||||| |||| ||| | | | ||||||| ||||| || || ||| | || ||||| Sbjct 26912847 TGGAATCCAAGGGATCTTCCTCTGATGGCGTTGCCCCCATGCCATGCCCTCTGCCAGTTC 26912788 Query 41085 TACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTA 41144 ||||| || |||| ||||| ||||| |||| || |||||| | ||| |||| ||| Sbjct 26912787 TACGTGGTGAACAGTGAGCTGTCCTGTCAGCTGTACCAGAGATCAAGAGACGTGGGCCTA 26912728 Query 41145 GGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGAT--TGCACACGTTA 41202 || | || || ||||| | || || || ||||||||||| ||||| |||||| | | Sbjct 26912727 GGTATGCCTTTCAACATCACCAGCTACGCCCTGCTCACGTACATGATCATGCACA--TCA 26912670 Query 41203 CCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATC 41262 | | || || ||||| ||||| || | || ||||||| |||||||||| | |||| Sbjct 26912669 CGGGCCTGAAGCCAGGTGATTTTGTACATGCTTTGGGAGATGCACATATTTACCTGAATC 26912610 Query 41263 ACATAGAGCC 41272 |||| ||||| Sbjct 26912609 ACATCGAGCC 26912600 Score = 109 bits (120), Expect = 4e-19 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 23199925 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 23199867 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 23199866 CATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATAAAAGAT 23199818 >seq12 Length=39782659 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| ||||| || ||||| |||| Sbjct 25689144 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAACGGTGAGCTGT 25689203 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || ||||||| |||||||| |||||||| ||||| || || || ||||| || | Sbjct 25689204 CCTGCCAGCTGTATCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 25689263 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| ||||| || ||| Sbjct 25689264 GCTACGCCCTGCTCACGTACATGATCGCGCAC 25689295 >seq132 Length=5918258 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| | ||||| |||||||| || ||||| | Sbjct 989839 AAAATCCTTTTGATTTTATGGAAAACATTTCTCTAGAAGGAAAAACAAATTTCTTTGAGA 989898 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 989899 AACGAGTTTCAGAGTATCAGCG 989920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442989029430