Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq22 116 3e-21 seq12 107 2e-18 >seq22 Length=27210278 Score = 116 bits (128), Expect = 3e-21 Identities = 219/322 (68%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 111615 AAAGTCATCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGG 111674 |||||| ||||| || || ||||| ||||| |||| ||| || || ||||| Sbjct 26912503 AAAGTCTTCAGCTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGG 26912562 Query 111675 AAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAAC 111734 || || | | | || |||||| | || | |||| |||||||| | |||| Sbjct 26912563 GAAAGGTCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAAT 26912622 Query 111735 ATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAAT 111794 ||| |||||||| | | ||| | || || | |||| || || |||||||| || Sbjct 26912623 ATGTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGAT 26912682 Query 111795 CATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCC 111854 |||||| ||||| || ||| || | ||||| || |||| ||||||||||| |||| Sbjct 26912683 CATGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCT 26912742 Query 111855 CGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTAC 111914 ||||| || || |||||||| || || | | | | ||| || || || || || | Sbjct 26912743 TGATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGAGGGC 26912802 Query 111915 ATGACAAGGAGGCAATGCCATC 111936 ||| || || ||||| |||||| Sbjct 26912803 ATGGCATGGGGGCAACGCCATC 26912824 >seq12 Length=39782659 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||| || |||||||| ||||| || ||| || || ||||| || |||||| Sbjct 25689303 CCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACA 25689244 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 ||||||||||| ||||| ||||| ||||| ||||| || || || | | | ||| Sbjct 25689243 CCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACCACG 25689184 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| || ||||||| |||||| Sbjct 25689183 TAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 25689145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391932769415818