Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq167 95.1 1e-14 seq81 91.5 2e-13 seq37 82.4 8e-11 >seq167 Length=3513951 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||| ||||| | || || | |||||||||||| |||| || |||||||| Sbjct 2586545 GTGAAGATATATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 2586486 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| |||||| ||||||||||||||||| | | Sbjct 2586485 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 2586426 Query 152149 ATCGT 152153 || || Sbjct 2586425 ATGGT 2586421 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || || | || |||| ||||||||||||| || | ||||| || || Sbjct 2586545 GTGAAGATATATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 2586486 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| ||||||||| || |||||||| |||| | Sbjct 2586485 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 2586426 Query 117425 ATCGT 117429 || || Sbjct 2586425 ATGGT 2586421 >seq81 Length=10074920 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 4056711 GTAAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 4056770 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||| ||||||||||| |||||||| || ||| Sbjct 4056771 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 4056830 Query 117425 ATCGT 117429 || || Sbjct 4056831 ATAGT 4056835 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || || || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 4056711 GTAAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 4056770 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | ||||| ||||| || |||||||||||||||||| Sbjct 4056771 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 4056830 Query 152149 ATCGT 152153 || || Sbjct 4056831 ATAGT 4056835 >seq37 Length=19344684 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || |||||||||| | | |||||| ||||| | ||||||||||| ||||| || ||| Sbjct 211628 CCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 211687 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || |||| || |||||| |||||||||||||| || |||||| Sbjct 211688 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAG 211747 Query 74889 GCGACAAGGCGTT 74901 || ||| | ||| Sbjct 211748 GCTGCAACGTGTT 211760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547197627222800