Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq167 95.1 1e-14
seq81 91.5 2e-13
seq37 82.4 8e-11
>seq167
Length=3513951
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||| ||||| | || || | |||||||||||| |||| || ||||||||
Sbjct 2586545 GTGAAGATATATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 2586486
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | |||||| || || ||| |||||| ||||||||||||||||| | |
Sbjct 2586485 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 2586426
Query 152149 ATCGT 152153
|| ||
Sbjct 2586425 ATGGT 2586421
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| || || || | || |||| ||||||||||||| || | ||||| || ||
Sbjct 2586545 GTGAAGATATATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 2586486
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| |||||||||||| || ||| ||||||||| || |||||||| |||| |
Sbjct 2586485 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 2586426
Query 117425 ATCGT 117429
|| ||
Sbjct 2586425 ATGGT 2586421
>seq81
Length=10074920
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| ||||| ||||||| |||||||||||| ||||||||| ||| || || || || ||
Sbjct 4056711 GTAAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 4056770
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | ||||| ||||||||||| |||||||| || |||
Sbjct 4056771 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 4056830
Query 117425 ATCGT 117429
|| ||
Sbjct 4056831 ATAGT 4056835
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| || || || || | ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 4056711 GTAAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 4056770
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || | ||| | ||||| ||||| || ||||||||||||||||||
Sbjct 4056771 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 4056830
Query 152149 ATCGT 152153
|| ||
Sbjct 4056831 ATAGT 4056835
>seq37
Length=19344684
Score = 82.4 bits (90), Expect = 8e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
|| |||||||||| | | |||||| ||||| | ||||||||||| ||||| || |||
Sbjct 211628 CCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 211687
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|| | ||| || |||| || |||||| |||||||||||||| || ||||||
Sbjct 211688 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAG 211747
Query 74889 GCGACAAGGCGTT 74901
|| ||| | |||
Sbjct 211748 GCTGCAACGTGTT 211760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547197627222800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |