Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2 127 3e-24 >seq2 Length=71252344 Score = 127 bits (140), Expect = 3e-24 Identities = 560/881 (64%), Gaps = 9/881 (1%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| || ||||||| |||||||| || || || || |||||| | || ||||| Sbjct 67569600 GCCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCGTATTCTATCGTGGTTCATCACAA 67569659 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 |||||| ||| | || | || |||||||||||||| || ||||| |||| ||| | Sbjct 67569660 GATCGAAATGCTTGACAGGCTACTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCAT 67569719 Query 13790 CCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 || |||||| || |||| || | || | | | | | || ||| || Sbjct 67569720 TCATGTGGACAGGAAATCCGAGGATTCCTATTTAGCTGCAGTGAT--GGGCATTGCTTCC 67569777 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 || ||| ||| || | ||||| ||| || | ||||| || | || ||||| Sbjct 67569778 TGTTTCAGTAATGTCTTCGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 67569837 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || || ||||| ||||||| ||||||| |||||| |||| | || |||| | Sbjct 67569838 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACCTCTACGCAATGAGGGCAAATTGGAAG 67569897 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 |||||| |||| || || |||||||| || || | || ||||||||||| || || || Sbjct 67569898 TACCTGATCAATCTTTGTGGGATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGG 67569957 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAG 14087 ||| ||| || || | ||| |||||| | ||| | ||||| | | ||| Sbjct 67569958 AAGCTCAAGTTGTTGATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCAATAAG 67570017 Query 14088 CTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGC 14147 | | | ||| || | | ||| || || | || ||||| || Sbjct 67570018 GAAGAAAGGTGGAAAAAGCGGTATGAGGT---CATTAATGGAAAGTTGACAAACACAGGG 67570074 Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCG 14207 | ||| | || ||||| | ||| | ||| | || | || ||||||| | Sbjct 67570075 ACTGTCAAAATGCTTCCTCCGCTGGAAACACCCCTTTTTTCTGGCAGTGCCTACTTTGTG 67570134 Query 14208 GTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCAC 14267 |||| |||||| |||| | || || || | || | | | ||| | Sbjct 67570135 GTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATCCAAAAGTTTATGGAA 67570194 Query 14268 TGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTAC 14327 ||| | ||||| || ||||| || ||| | || ||||| ||| | ||||| || | | Sbjct 67570195 TGGGCGCAAGACACATATAGCCCTGATGAGTATCTCTGGGCTACCATCCAGAGGAT-TCC 67570253 Query 14328 GGGACGCCCGGGGGGA-TCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAA 14386 | | |||||| | || | | | | |||||||| || |||||| ||| Sbjct 67570254 TGAAGTCCCGGGCTCACTCTCTGCTAGCCATAAGTACGATTTGTCTGACATGCAGGCGGT 67570313 Query 14387 GGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCC 14446 | |||||| ||||||||||| |||| ||||| ||| | | || || | ||||| Sbjct 67570314 TGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTTCAGGGGTGCTCCCTACCC 67570373 Query 14447 GCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTG 14506 || |||||||| | ||||| | | | | ||| | ||||| | |||||| |||| || Sbjct 67570374 ACCCTGCGACGGGGTGCACGTGCGCTCGGTGTGCGTTTTCGGAGCTGGCGACTTGAACTG 67570433 Query 14507 GCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACG 14547 | || | || | |||||||| ||||| ||||| |||| Sbjct 67570434 GATGCTGCGCAAGCACCACCTGTTTGCCAATAAGTTTGACG 67570474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658717082831360