Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq22 141 8e-29 seq12 134 1e-26 seq47 123 2e-23 seq126 118 9e-22 seq30 100 2e-16 seq2 84.2 2e-11 >seq22 Length=27210278 Score = 141 bits (156), Expect = 8e-29 Identities = 193/268 (72%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| |||| | || | || |||||| | ||||| || || | || || ||||| Sbjct 26912560 TGGGAAAGG-TCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 26912618 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | || || ||||||| || ||||| || || || | || || |||| ||| Sbjct 26912619 AAATATGTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCA 26912678 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 |||||||||||||| || | |||||||| |||||| || || | || || |||| || Sbjct 26912679 TGATCATGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGT 26912738 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | | || |||||||| |||||||| || ||||| | || |||||| ||||| || | Sbjct 26912739 CTCTTGATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGA 26912798 Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||| ||||| || || | ||||| || Sbjct 26912799 GGGCATGGCATGGGGGCAACGCCATCAG 26912826 >seq12 Length=39782659 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 25689306 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 25689247 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || || ||||| || ||||| || || ||||| |||| | Sbjct 25689246 ACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 25689187 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 25689186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 25689143 Score = 111 bits (122), Expect = 1e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||| ||||||||||| || || || || |||| ||| Sbjct 25685097 CATATCTCTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 25685038 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| ||| ||| ||| | |||| |||||||| ||| || ||||| || Sbjct 25685037 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 25684978 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 |||||| || || ||||| ||| |||||||| | |||||||| || |||| Sbjct 25684977 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 25684926 >seq47 Length=17121399 Score = 123 bits (136), Expect = 2e-23 Identities = 191/268 (71%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 110371 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 110430 ||||| ||||||||| || || || || || ||||||||||| ||||| || || Sbjct 7276482 GCCAGAAAATGAGCTCCTTGTGGAGGCTCCTTGAGTTCCCTGCTGAGAACTACATTAATT 7276423 Query 110431 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 110490 || || || | ||||| |||||| || || ||||||||||| ||||| |||||||| ||| Sbjct 7276422 CTATCCCTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATGATC 7276363 Query 110491 ACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAA 110549 |||| ||||| || || |||||||| || | |||| | ||| | || || | || Sbjct 7276362 ACCAAATTCTGTTTATCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATGCCTGAA 7276304 Query 110550 ATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-T 110608 || || || || |||| ||||| || ||||| || ||| |||||||| | Sbjct 7276303 TTCATT------CCTGAACGGCGGCCAGGGCAGGTCACCGTTCTTGCCGGTGCCCATGTT 7276250 Query 110609 CTGGACACGCGGCCACGATACCGTTCAG 110636 |||| || | || ||||| | ||| || Sbjct 7276249 CTGG-GACACAGCGACGATGCAGTTTAG 7276223 >seq126 Length=6219632 Score = 118 bits (130), Expect = 9e-22 Identities = 158/213 (74%), Gaps = 10/213 (5%) Strand=Plus/Minus Query 110407 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 110466 ||||||||||| ||||| || || || || | | ||||| |||||| || || |||||| Sbjct 45164 TCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 45105 Query 110467 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCG 110526 ||||| ||||| |||||||| |||||||| ||||| || || |||||||| || | | Sbjct 45104 AACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTATCTTCTACTGAAGAGGTTGTG 45045 Query 110527 GTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATC 110585 ||| | ||| | || || | || || || | | ||| | |||| ||||| || Sbjct 45044 GTC-ATTCTCTGGAAATGCCTGAATTCGTTCCTGA-----GCA-GCGGCCAGGGCAGGTC 44992 Query 110586 TCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 110616 ||||| || |||||||||||| ||| |||||| Sbjct 44991 ACCGTTCTTGCCGATGCCCATGTTCTGGGACAC 44959 >seq30 Length=22521080 Score = 100 bits (110), Expect = 2e-16 Identities = 181/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| || | || || || || | Sbjct 9522977 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACCAAATTAATTCTATCCTT 9523036 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| |||| ||||||||| ||||||| || Sbjct 9523037 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTGTCTACCCATAATCACCAGATT 9523096 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| | |||||| || | ||| | ||| | || | | || || || | Sbjct 9523097 CTGTTTACCTTCTATTGAAGAAGTTGTAGTC-ATTCTCTGGAAATACCTGAATTCATTTC 9523155 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 ||| || |||| ||||| || || || || ||||| |||||| ||||| || Sbjct 9523156 TGAGT------GGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTCTGG-GAC 9523208 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 9523209 ACAGCGACGATGCAGTTTAG 9523228 >seq2 Length=71252344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || ||| ||||||| ||||| || || || || | | |||| |||||| || || Sbjct 59356448 TTGAGTTCCTTGCTGAGAACTACATTAATTCTATCCTTTAAGGGTCGATTCTTCTCAGGA 59356389 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 110504 ||||||||||| ||||| |||||||| ||||||| ||||| || Sbjct 59356388 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTT 59356345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406297099175112