Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq11 100 2e-16
seq9 95.1 8e-15
seq88 91.5 9e-14
seq4 91.5 9e-14
>seq11
Length=43820709
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| || ||| ||||| || || ||| ||| || || ||||| | |||||
Sbjct 25320730 GCCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGA 25320789
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | || || || ||||| ||||||||||| | |||||| ||||| || ||
Sbjct 25320790 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 25320849
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||| ||||||| ||| ||| | ||| || | ||| ||||| | ||| |
Sbjct 25320850 GATACCCTTCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 25320908
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || || || || || | || |||||||| ||||||||
Sbjct 25320909 CCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 25320957
>seq9
Length=44311105
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| || |||| ||| | || || ||| ||| || |||||||| || |||||
Sbjct 3708447 GCCACCTCACAGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 3708388
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||||| | | || || || ||||||||||||||||| | || ||| ||||| || ||
Sbjct 3708387 GAGTGTGCCGCCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGG 3708328
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| ||| ||| | ||| || | | | || || | ||| |
Sbjct 3708327 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAGTGGTATCACTGGGCTCGA 3708269
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || || | || || | || |||||||| ||||| ||
Sbjct 3708268 CCTCAAGGGTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| || |||| ||||| || || ||| |||||| || ||||| || |||||
Sbjct 14505872 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 14505813
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| || | || || || ||||| ||||||||||| | || ||| ||||| | ||
Sbjct 14505812 GCGTG--CGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGG 14505755
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| || ||||||||| ||| ||| | ||| || | | | ||||| | ||| |
Sbjct 14505754 GATACCTTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGA 14505696
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || || || || || | || |||||||| ||||||||
Sbjct 14505695 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 14505647
Score = 93.3 bits (102), Expect = 3e-14
Identities = 155/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| ||||| || || ||| ||| || || ||||| || ||||| ||| ||
Sbjct 19097344 AGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTGAGCGTGAG-GC 19097286
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || ||||| | ||||||||| | |||||| ||||| || || | ||||||
Sbjct 19097285 -CATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCC 19097227
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | ||| || | ||| ||||| | ||| || || | |||
Sbjct 19097226 TTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 19097168
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || |||||||| ||||||||
Sbjct 19097167 GATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 19097129
>seq88
Length=9397244
Score = 91.5 bits (100), Expect = 9e-14
Identities = 158/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| || ||| |||| | || || ||| ||| || || ||||| || |||||
Sbjct 1074120 GCCACCTCGCAGGTGCAGCACCCAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 1074179
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||||| || | || || || |||||||| |||||||| | | |||| || || | ||
Sbjct 1074180 GAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAATATCAGAGGCTGCTGATCAGATGG 1074239
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| ||| ||| | ||| || | ||| ||||| | ||| |
Sbjct 1074240 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 1074298
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGC 34704
| | | ||| || || || || || | || |||||||| ||||||
Sbjct 1074299 CCTTAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGC 1074345
>seq4
Length=54856640
Score = 91.5 bits (100), Expect = 9e-14
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| || ||| ||||| || || ||| ||| || || |||| || |||||
Sbjct 22856079 GCCACCTCGCAGGTGCAGCACCAGGTGTAGGGTGACCTCTTTCTGGGTGTTGTAGTCTGA 22856020
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | || || || ||||||||||||||| | |||||| ||||| || |
Sbjct 22856019 GAGAGTGCGGCCATCCTCCAGCGATTTACCGGCAAATATCAGACGCTGCTGGTCAGGTTG 22855960
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||| ||| ||| ||| | ||| ||| | | | ||||| | | ||| |
Sbjct 22855959 GATACCCTCCTTCTCT-TGAATTTTGGCTTTGACGTTCTCAGTGGTGTCATTGGACTCGA 22855901
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || || || || | | ||||||||| | ||||||||
Sbjct 22855900 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTTTTCACAGAGATCTGCAT 22855852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314719297129838
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |