Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq22 221 1e-52
seq12 183 3e-41
>seq22
Length=27210278
Score = 221 bits (244), Expect = 1e-52
Identities = 291/401 (73%), Gaps = 2/401 (0%)
Strand=Plus/Plus
Query 6393 CCTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGT 6452
|||| || |||| ||||| || | | | |||| | ||||||||| | | ||||
Sbjct 26912448 CCTAAACAGCCATTTCCATTTTAATAGTTGGGTGCAGATTGTACCCTTCAACCTTAAAGT 26912507
Query 6453 CCTC-GCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAAC 6511
| || ||| | |||||||| ||| || ||||| ||| ||||||| |||||
Sbjct 26912508 CTTCAGCTT-TGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAA 26912566
Query 6512 GGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGC 6571
|||| | | |||| || ||||| || || |||||||||| |||||||| |||||
Sbjct 26912567 GGTCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGT 26912626
Query 6572 GCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATG 6631
||||| ||||| | ||| || | || || || || ||| || || |||||||
Sbjct 26912627 GCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGATCATG 26912686
Query 6632 TACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGAT 6691
||||||||||| ||||| || | |||||||| |||| |||| |||| ||||| |||
Sbjct 26912687 TACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCTTGAT 26912746
Query 6692 CGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGG 6751
| || || ||||| ||||||||||| | ||| | |||||||| |||||||||| |||
Sbjct 26912747 CTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGAGGGCATGG 26912806
Query 6752 CACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792
|| ||||| | |||||||||||| |||||| | || |||||
Sbjct 26912807 CATGGGGGCAACGCCATCAGAGGAAGATCCCTTGGATTCCA 26912847
Score = 221 bits (244), Expect = 1e-52
Identities = 291/401 (73%), Gaps = 2/401 (0%)
Strand=Plus/Minus
Query 34553 TGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTC 34612
||||| || | |||||| |||||||||||| | ||||| ||||| |||||||||| |||
Sbjct 26912847 TGGAATCCAAGGGATCTTCCTCTGATGGCGTTGCCCCCATGCCATGCCCTCTGCCAGTTC 26912788
Query 34613 TACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTA 34672
||||| | ||| | ||||||||||| ||||| || || |||| ||||| |||| ||
Sbjct 26912787 TACGTGGTGAACAGTGAGCTGTCCTGTCAGCTGTACCAGAGATCAAGAGACGTGGGCCTA 26912728
Query 34673 GGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG 34732
|| |||| |||||||| | || ||||| |||||||||||||||||| || || |
Sbjct 26912727 GGTATGCCTTTCAACATCACCAGCTACGCCCTGCTCACGTACATGATCATGCACATCACG 26912668
Query 34733 GGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792
|| || || || || | || ||| | ||||| ||||| ||||| |||||||| |||
Sbjct 26912667 GGCCTGAAGCCAGGTGATTTTGTACATGCTTTGGGAGATGCACATATTTACCTGAATCAC 26912608
Query 34793 ATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATT 34852
||||||| || || ||||| || |||| | | |||| ||||| ||||||| |||
Sbjct 26912607 ATCGAGCCACTGAAAATTCAGCTTCAGTGAGAACGCAGACCTTTCCCAAAGCTCAAGATT 26912548
Query 34853 ATTCGAGCCGTCACCTCAATCGATGACTTTAGGAGC-GAGGACTTCGTGTTGGAAGGGTA 34911
||||| || ||| |||||||| | ||| || ||||| | | ||||||||
Sbjct 26912547 CTTCGAAAAGTTGAGAAAATTGATGACTTCA-AAGCTGAAGACTTTAAGGTTGAAGGGTA 26912489
Query 34912 CCGGCCGCACTCGGCCCTGAAGATGGAGTTGGCGGTGTAGG 34952
| | |||| | | | || ||||| |||| || ||||
Sbjct 26912488 CAATCTGCACCCAACTATTAAAATGGAAATGGCTGTTTAGG 26912448
>seq12
Length=39782659
Score = 183 bits (202), Expect = 3e-41
Identities = 137/161 (85%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| |||||||||||||| || || ||||| |||||||||| |||||||| | |||
Sbjct 25689134 GATCTTCCTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 25689193
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||||||||| ||||| |||| ||||||||||| |||| ||||| |||
Sbjct 25689194 GGTGAGCTGTCCTGCCAGCTGTATCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTC 25689253
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||||| |||||||||||||||||||| ||
Sbjct 25689254 AACATCGCCAGCTACGCCCTGCTCACGTACATGATCGCGCA 25689294
Score = 183 bits (202), Expect = 3e-41
Identities = 137/161 (85%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| |||||||||||||||||||| ||||| || || |||||||| ||||| |||| |||
Sbjct 25689294 TGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 25689235
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|||||||| |||| ||||| ||||||||||||||||| || ||| | |||||||| |||
Sbjct 25689234 ATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 25689175
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| ||||| || || |||||||||||||| |||||
Sbjct 25689174 CAGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATC 25689134
Score = 102 bits (112), Expect = 7e-17
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| || | || ||||| || ||| ||| ||||| |||||||| || | || || |
Sbjct 25684934 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 25684993
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412
||||||||||||| | ||| ||| | | | || || || ||||||||||| || |
Sbjct 25684994 GAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAGAAGGGGACTTGGGCCCAGTTT 25685053
Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
| || |||||||||||||| |||||||| || ||
Sbjct 25685054 ATGGCTTCCAGTGGAGACATTTTGGGGCAGAATA 25685087
Score = 102 bits (112), Expect = 7e-17
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| |||||||||||||| || || || ||||||||||| || || ||
Sbjct 25685087 TATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 25685028
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | | ||| ||| | |||||||||||||| || || | || |||||||| |||
Sbjct 25685027 CTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 25684968
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
|| ||| ||| || ||||| || | || ||||
Sbjct 25684967 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 25684934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448247349589920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |