Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq22 221 1e-52 seq12 183 3e-41 >seq22 Length=27210278 Score = 221 bits (244), Expect = 1e-52 Identities = 291/401 (73%), Gaps = 2/401 (0%) Strand=Plus/Plus Query 6393 CCTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGT 6452 |||| || |||| ||||| || | | | |||| | ||||||||| | | |||| Sbjct 26912448 CCTAAACAGCCATTTCCATTTTAATAGTTGGGTGCAGATTGTACCCTTCAACCTTAAAGT 26912507 Query 6453 CCTC-GCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAAC 6511 | || ||| | |||||||| ||| || ||||| ||| ||||||| ||||| Sbjct 26912508 CTTCAGCTT-TGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAA 26912566 Query 6512 GGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGC 6571 |||| | | |||| || ||||| || || |||||||||| |||||||| ||||| Sbjct 26912567 GGTCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGT 26912626 Query 6572 GCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATG 6631 ||||| ||||| | ||| || | || || || || ||| || || ||||||| Sbjct 26912627 GCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGATCATG 26912686 Query 6632 TACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGAT 6691 ||||||||||| ||||| || | |||||||| |||| |||| |||| ||||| ||| Sbjct 26912687 TACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCTTGAT 26912746 Query 6692 CGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGG 6751 | || || ||||| ||||||||||| | ||| | |||||||| |||||||||| ||| Sbjct 26912747 CTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGAGGGCATGG 26912806 Query 6752 CACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 || ||||| | |||||||||||| |||||| | || ||||| Sbjct 26912807 CATGGGGGCAACGCCATCAGAGGAAGATCCCTTGGATTCCA 26912847 Score = 221 bits (244), Expect = 1e-52 Identities = 291/401 (73%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 34553 TGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTC 34612 ||||| || | |||||| |||||||||||| | ||||| ||||| |||||||||| ||| Sbjct 26912847 TGGAATCCAAGGGATCTTCCTCTGATGGCGTTGCCCCCATGCCATGCCCTCTGCCAGTTC 26912788 Query 34613 TACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTA 34672 ||||| | ||| | ||||||||||| ||||| || || |||| ||||| |||| || Sbjct 26912787 TACGTGGTGAACAGTGAGCTGTCCTGTCAGCTGTACCAGAGATCAAGAGACGTGGGCCTA 26912728 Query 34673 GGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG 34732 || |||| |||||||| | || ||||| |||||||||||||||||| || || | Sbjct 26912727 GGTATGCCTTTCAACATCACCAGCTACGCCCTGCTCACGTACATGATCATGCACATCACG 26912668 Query 34733 GGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 || || || || || | || ||| | ||||| ||||| ||||| |||||||| ||| Sbjct 26912667 GGCCTGAAGCCAGGTGATTTTGTACATGCTTTGGGAGATGCACATATTTACCTGAATCAC 26912608 Query 34793 ATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATT 34852 ||||||| || || ||||| || |||| | | |||| ||||| ||||||| ||| Sbjct 26912607 ATCGAGCCACTGAAAATTCAGCTTCAGTGAGAACGCAGACCTTTCCCAAAGCTCAAGATT 26912548 Query 34853 ATTCGAGCCGTCACCTCAATCGATGACTTTAGGAGC-GAGGACTTCGTGTTGGAAGGGTA 34911 ||||| || ||| |||||||| | ||| || ||||| | | |||||||| Sbjct 26912547 CTTCGAAAAGTTGAGAAAATTGATGACTTCA-AAGCTGAAGACTTTAAGGTTGAAGGGTA 26912489 Query 34912 CCGGCCGCACTCGGCCCTGAAGATGGAGTTGGCGGTGTAGG 34952 | | |||| | | | || ||||| |||| || |||| Sbjct 26912488 CAATCTGCACCCAACTATTAAAATGGAAATGGCTGTTTAGG 26912448 >seq12 Length=39782659 Score = 183 bits (202), Expect = 3e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| |||||||||||||| || || ||||| |||||||||| |||||||| | ||| Sbjct 25689134 GATCTTCCTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 25689193 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| ||||| |||| ||||||||||| |||| ||||| ||| Sbjct 25689194 GGTGAGCTGTCCTGCCAGCTGTATCAGAGATCAGGAGACATGGGCCTAGGTGTGCCTTTC 25689253 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||||||||||||||| || Sbjct 25689254 AACATCGCCAGCTACGCCCTGCTCACGTACATGATCGCGCA 25689294 Score = 183 bits (202), Expect = 3e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||||||||||||| ||||| || || |||||||| ||||| |||| ||| Sbjct 25689294 TGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 25689235 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| |||| ||||| ||||||||||||||||| || ||| | |||||||| ||| Sbjct 25689234 ATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 25689175 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || |||||||||||||| ||||| Sbjct 25689174 CAGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATC 25689134 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || ||||| || ||| ||| ||||| |||||||| || | || || | Sbjct 25684934 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 25684993 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||||||||| | ||| ||| | | | || || || ||||||||||| || | Sbjct 25684994 GAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAGAAGGGGACTTGGGCCCAGTTT 25685053 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| |||||||| || || Sbjct 25685054 ATGGCTTCCAGTGGAGACATTTTGGGGCAGAATA 25685087 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| |||||||||||||| || || || ||||||||||| || || || Sbjct 25685087 TATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 25685028 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||||||||||| || || | || |||||||| ||| Sbjct 25685027 CTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 25684968 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || ||||| || | || |||| Sbjct 25684967 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 25684934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247349589920