Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq30 217 1e-51 seq47 208 6e-49 seq74 176 4e-39 seq126 150 1e-31 seq111 134 1e-26 seq17 118 9e-22 seq22 107 2e-18 seq12 102 7e-17 >seq30 Length=22521080 Score = 217 bits (240), Expect = 1e-51 Identities = 378/547 (69%), Gaps = 7/547 (1%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || ||||| || || || ||||| | ||||| Sbjct 9523228 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGTATCGGCAAGAAGGGGGACCTGCCC 9523169 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || | ||||||||| | |||| || | |||||| | ||||||| | Sbjct 9523168 TGGCCGCCACTCAGAAATGAATTCAGGTATTTCCAGAGAATGACTACAACTTCTTCAATA 9523109 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| ||| |||| ||||| || |||| | | | Sbjct 9523108 GAAGGTAAACAGAATCTGGTGATTATGGGTAGACAGACCTGGTTCTCCATTCC--TGAGA 9523051 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| |||||||||| ||| | || || || || | Sbjct 9523050 AGAATCGACCTTTAAAGGATAGAATTAATTTGGTTCTCAGCAGAGAACTCAAGGAACCTC 9522991 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | | ||| | || Sbjct 9522990 CACAAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGCATTAAACCTTACTGAACAAC 9522931 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 | |||||| | | | || |||| |||||||||||||||||| || ||||| ||| ||| Sbjct 9522930 CGGAATTAGCAAATAAAGTAGATATGATTTGGATAATTGGTGGCAGTTCTGTTTATAAGG 9522871 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | | || | | | || ||| | ||||| || |||| | |||| Sbjct 9522870 AAGCCATGAGTCACCCAGGCCACCTTAAACTATTTGTGACAAGAATCATGCAGGACTTTG 9522811 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| || | || || |||||| || | ||||||| || || | |||| | Sbjct 9522810 AAAGTGACACGTTTTTTCCGGAAATTTATTTGGAGAAATACAGACTTCTGCCAGAATACC 9522751 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 ||||||||| ||||| || || || || || || |||| ||||| ||||| |||||| Sbjct 9522750 CAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAGTTTGAAGTATATG 9522691 Query 2675 aaaaaaa 2681 | || || Sbjct 9522690 AGAAGAA 9522684 >seq47 Length=17121399 Score = 208 bits (230), Expect = 6e-49 Identities = 378/548 (69%), Gaps = 9/548 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || ||||||| || || || || | ||||| Sbjct 7276223 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCACCGGCAAGAACGGTGACCTGCCC 7276282 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || | | |||||||| | ||||| || | |||||| | | ||||| Sbjct 7276283 TGGCCGCCGTTCAGGAATGAATTCAGGCATTTCCAGAGAATGACCACAACCTCTTCAGTA 7276342 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || || ||||| || ||||| ||||| || |||| | | | Sbjct 7276343 GAAGATAAACAGAATTTGGTGATCATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 7276400 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| | | ||||| ||| | |||||||| || | || || ||||| | Sbjct 7276401 AGAATCGACCTTTAAGGGATAGAATTAATGTAGTTCTCAGCAGGGAACTCAAGGAGCCTC 7276460 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| | || | |||| | ||| | || | || ||| | || Sbjct 7276461 CACAAGGAGCTCATTTTCTGGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAAC 7276520 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||||||||||| || ||||| ||| ||| Sbjct 7276521 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAATTGGTGGCAGTTCTGTTTATAAGG 7276580 Query 2495 AGAGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | | || | | | |||||| | |||||||| |||| | ||| Sbjct 7276581 A-AGCCATGGATCACCCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACTTT 7276639 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| || | || ||||||||| || | ||||| |||| || | |||| | Sbjct 7276640 GAAAGTGACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATAT 7276699 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||||||||| | || || || || || |||| ||||||||||| ||||| Sbjct 7276700 CCAGGTGTTCCCTCTGATGCCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAT 7276759 Query 2674 Gaaaaaaa 2681 || || || Sbjct 7276760 GAGAAGAA 7276767 >seq74 Length=10970457 Score = 176 bits (194), Expect = 4e-39 Identities = 186/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| ||||| ||||||||||||||| ||||| Sbjct 8345720 GAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATAGCCACC 8345661 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || | | ||||| || || ||||| || || || || || ||||||| || Sbjct 8345660 TTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTATAAGGACAAGTTGAACATTACC 8345601 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| ||||| |||||| |||| || ||| ||||||| || || |||| ||||||||| Sbjct 8345600 CAGCTGGGACTCCAAAACTCAACCATCACCATCTGGAATACCACCCTGGAGGATGAAGGG 8345541 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||| |||| | || || || ||||| | ||||||||| ||||||| || || || Sbjct 8345540 TGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCAGGAACAGCCTGCCTC 8345481 Query 1521 ACCCT 1525 ||||| Sbjct 8345480 ACCCT 8345476 >seq126 Length=6219632 Score = 150 bits (166), Expect = 1e-31 Identities = 365/549 (66%), Gaps = 23/549 (4%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | | ||| || | || |||||||| || || || || | ||||| Sbjct 44941 CTAAACTGCATCGTTGTTGTGTCCCAGAACATGGGCATCGGCAAGAACGGTGACCTGCCC 45000 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| | || | || ||||| | ||||| || | |||||| | | ||||| Sbjct 45001 TGGCCGCTGCTCAGGAACGAATTCAGGCATTTCCAGAGAATGACCACAACCTCTTCAGTA 45060 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||||| || |||||||| || ||||| ||||| || |||| | | | Sbjct 45061 GAAGATAAACAGAATGTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 45118 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| || | Sbjct 45119 AGAATCGACCTTTAAAGGATAGAATTAATGTAGTTCTCAG-------------CAGGGAA 45165 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| | || | |||| | ||| | || | || ||| | || Sbjct 45166 CACAAGGAGCTCATTTTCTGGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAAC 45225 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||||||||||| || ||||| ||| ||| Sbjct 45226 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAATTGGTGGCAGTTCTGTTTATAAGG 45285 Query 2495 AGAGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | | || | | | |||||| | |||||||| || | | ||| Sbjct 45286 A-AGCCATGGATCACCCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGTAGGACTTT 45344 Query 2554 GAATGTGATAC-ATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612 ||| |||| || | || ||||||||| | ||||| |||| || | |||| Sbjct 45345 GAAAGTGACACGTTTTTTTCCAGAAATTGACTGGGAGAAATATAAACTTCTGCCAGAATA 45404 Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATA 2672 ||||||||||||||||| | || || || || | |||| |||||||| || |||| Sbjct 45405 TCCAGGTGTTCCCTCTGATGCCCAGGAGGAGAAAGACATTAAGTACAAATTCGAAGTATA 45464 Query 2673 TGaaaaaaa 2681 ||| || || Sbjct 45465 TGAGAAGAA 45473 >seq111 Length=7367144 Score = 134 bits (148), Expect = 1e-26 Identities = 224/321 (70%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 2362 CTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAA 2421 ||||| ||||| |||| || ||||| ||| | || | |||| | ||| | || | || Sbjct 6739779 CTTAAGGAGCCTCCACAAGGAGCTCATTTTCTGGCCAGAAGTCTGGATGATGCCTTAAAA 6739720 Query 2422 ATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGA 2481 ||| | |||||||||| | | | || || | |||||||||||||||||| || Sbjct 6739719 CTTACTGAACAACCAGAATTAGCAAATAAAGTAGACATGATTTGGATAATTGGTGGCAGT 6739660 Query 2482 TCTGTCTATGAGGAGAGCATTACAAGATCTTG-CAAACAGATGCTGTTTTTAACAAGGAT 2540 ||||| ||| |||| ||| | | | | | | | | | |||||| | |||||||| Sbjct 6739659 TCTGTTTATAAGGA-AGCTATGGATCACCCAGGCCATCTTAAACTGTTTGTGACAAGGAT 6739601 Query 2541 TCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACA 2600 |||| | |||||| |||| || | || ||||||||| || | ||||| || | Sbjct 6739600 CATGCAGGACTTTGAAAGTGACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAGCT 6739541 Query 2601 ACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAA 2660 || | |||| ||||||||||||||||| | || || || || || |||| ||||| Sbjct 6739540 TCTGCCAGAATATCCAGGTGTTCCCTCTGATGCCCAGGAGGAGAAAGGCATTAAGTACAA 6739481 Query 2661 ATTTGAGATATATGaaaaaaa 2681 |||||| ||||||| || || Sbjct 6739480 ATTTGAAGTATATGAGAAGAA 6739460 >seq17 Length=31320352 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 15578492 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 15578551 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 15578552 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 15578611 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 15578612 ATCGCCCTGTGGATGACCGA 15578631 >seq22 Length=27210278 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||||||||| |||||||||| || | ||| ||||| || | | |||| Sbjct 26912585 AGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGCATGT 26912644 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || ||||| || | || || || | ||| |||||||| || | || |||| Sbjct 26912645 ACAAAATCACCTGGCTTCAGGCCCGTGATGTGCATGATCATGTACGTGAGCAGGGCGTAG 26912704 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 |||| | || ||||| | ||| || |||| |||| |||||||||||||| || || Sbjct 26912705 CTGGTGATGTTGAAAGGCATACCTAGGCCCACGTCTCTTGATCTCTGGTACAGCTGACAG 26912764 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCA 118687 || ||||| | ||| | || || ||||| | | | || ||||| |||| Sbjct 26912765 GACAGCTCACTGTTCACCACGTAGAACTGGCAGAGGGCATGGCATGGGGGCA 26912816 >seq12 Length=39782659 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || ||||| Sbjct 25689306 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 25689247 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| |||||||||| |||| ||||| || ||||| ||||| | Sbjct 25689246 ACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 25689187 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || ||||| | | | || ||||||||||| |||| Sbjct 25689186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 25689146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414463231842904