Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq9 93.3 4e-14
seq11 89.7 4e-13
>seq9
Length=44311105
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || ||| |||||| || || || || || | || || | |
Sbjct 19097342 GCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTATTCTG--AGCGTGAGGCC 19097285
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187
|| || |||||||||| |||||||| |||||||||||||| |||||| | | ||| |
Sbjct 19097284 ATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG-ATACCCTCCT 19097226
Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||||| ||||| || | | || || || | ||| || || | ||||
Sbjct 19097225 TGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGA 19097166
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| | || ||||| || || || |||||||| |||||||
Sbjct 19097165 TGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 19097127
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | ||||| || || ||| ||| || || || || || || |
Sbjct 14505872 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG- 14505814
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
|| || || | || || ||||||||||| |||||||| |||| ||||||||| ||||
Sbjct 14505813 -AGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACACTGCTGGTCAAGTGG 14505755
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | || ||||| ||||| ||||| || | || || || | ||| |
Sbjct 14505754 G-ATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGA 14505696
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || | ||||| | || ||||| || || || |||||||| |||||||
Sbjct 14505695 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 14505645
>seq11
Length=43820709
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | | | | ||||| || || ||| |||||| || || || | || |
Sbjct 25320730 GCCACCTCGCAGGTGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTTGTCTGA 25320789
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
|| || || | || || ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 25320790 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 25320849
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | || ||||| ||||| ||||| || | | || || || | ||| |
Sbjct 25320850 G-ATACCCTTCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 25320908
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || | ||||| | || || || || || || |||||||| |||||||
Sbjct 25320909 CCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATCT 25320959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429531538556318
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |