Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq22 158 1e-33
seq12 154 1e-32
seq47 123 2e-23
seq126 114 1e-20
seq30 95.1 1e-14
seq2 82.4 6e-11
>seq22
Length=27210278
Score = 158 bits (174), Expect = 1e-33
Identities = 197/269 (73%), Gaps = 1/269 (0%)
Strand=Plus/Plus
Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669
||||||||| |||| | || | || |||||||| |||| || || | ||| | ||||
Sbjct 26912560 TGGGAAAGG-TCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 26912618
Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729
| | || |||||||||| | || ||||| || || || | || || |||| |||
Sbjct 26912619 AAATATGTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCA 26912678
Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789
|||||||||||||| || | |||||||| |||||| || |||| || || |||| ||
Sbjct 26912679 TGATCATGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGT 26912738
Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849
| | ||| |||||||| ||||| || || ||||| | || |||||| ||||| || |
Sbjct 26912739 CTCTTGATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGA 26912798
Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||||||| || || | ||||| |||
Sbjct 26912799 GGGCATGGCATGGGGGCAACGCCATCAGA 26912827
>seq12
Length=39782659
Score = 154 bits (170), Expect = 1e-32
Identities = 133/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || |||
Sbjct 25689306 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 25689247
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| ||||| ||||| || |||||||| || ||||| |||| |
Sbjct 25689246 ACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 25689187
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
||||| ||||| || | ||||||||| ||||| || ||||| |||
Sbjct 25689186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 25689142
Score = 93.3 bits (102), Expect = 3e-14
Identities = 112/151 (74%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||| ||||||||||| || || || || |||| ||| || ||||| ||| |||
Sbjct 25685075 AAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAAT 25685016
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| | |||| |||||||| ||| || ||||| |||||||| || || |||||
Sbjct 25685015 CCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 25684956
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167
|| |||||||| | |||||||| || ||||
Sbjct 25684955 GACAGCTCTTTAGCATTTGTGGATCC-CTGA 25684926
>seq47
Length=17121399
Score = 123 bits (136), Expect = 2e-23
Identities = 191/268 (71%), Gaps = 10/268 (4%)
Strand=Plus/Minus
Query 114254 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGC 114313
||||| ||||||||| || || || || || ||||||||||| ||||| || |
Sbjct 7276482 GCCAGAAAATGAGCTCCTTGTGGAGGCTCCTTGAGTTCCCTGCTGAGAACTACATTAATT 7276423
Query 114314 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 114373
|| || || | ||||| |||||| || || ||||||||||| ||||| |||||||| |||
Sbjct 7276422 CTATCCCTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATGATC 7276363
Query 114374 ACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAA 114432
|||| ||||| ||| || | ||||| || | |||| | ||| | || || | ||
Sbjct 7276362 ACCAAATTCTGTTTATCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATGCCTGAA 7276304
Query 114433 ATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-T 114491
|| || || | ||| |||| ||||| || ||||| || ||| |||||||| |
Sbjct 7276303 TTCATT------CCTGAACGGCGGCCAGGGCAGGTCACCGTTCTTGCCGGTGCCCATGTT 7276250
Query 114492 CTGGACACGCTGCCACGATACCGTTCAG 114519
|||| || | || ||||| | ||| ||
Sbjct 7276249 CTGG-GACACAGCGACGATGCAGTTTAG 7276223
>seq126
Length=6219632
Score = 114 bits (126), Expect = 1e-20
Identities = 157/213 (74%), Gaps = 10/213 (5%)
Strand=Plus/Minus
Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349
||||||||||| ||||| || | || || | | ||||| |||||| || || ||||||
Sbjct 45164 TCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 45105
Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCG 114409
||||| ||||| |||||||| |||||||| ||||| ||| || | ||||| || | |
Sbjct 45104 AACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTATCTTCTACTGAAGAGGTTGTG 45045
Query 114410 GTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATC 114468
||| | ||| | || || | || || || | || || || |||| ||||| ||
Sbjct 45044 GTC-ATTCTCTGGAAATGCCTGAATTCGTTCCTGAG---CAGCG---GCCAGGGCAGGTC 44992
Query 114469 TCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499
||||| || |||||||||||| ||| ||||||
Sbjct 44991 ACCGTTCTTGCCGATGCCCATGTTCTGGGACAC 44959
>seq30
Length=22521080
Score = 95.1 bits (104), Expect = 1e-14
Identities = 182/261 (70%), Gaps = 12/261 (5%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || |||||||| || | || | || || |
Sbjct 9522977 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACCAAATTAATTCTATCCTT 9523036
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||| |||| ||||||||| ||||||| ||
Sbjct 9523037 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTGTCTACCCATAATCACCAGATT 9523096
Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439
||| ||||| ||| | ||||| || | ||| | ||| | || | | || || ||
Sbjct 9523097 CTGTTTACCTTCTAT-TGAAGAAGTTGTAGTC-ATTCTCTGGAAATACCTGAATTCATT- 9523153
Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 114498
||| | || |||| ||||| || || || || ||||| |||||| ||||| |
Sbjct 9523154 -----TCTGAGTGGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTCTGG-GA 9523207
Query 114499 CGCTGCCACGATACCGTTCAG 114519
| | || ||||| | ||| ||
Sbjct 9523208 CACAGCGACGATGCAGTTTAG 9523228
>seq2
Length=71252344
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || ||| ||||||| ||||| || | || || | | |||| |||||| || ||
Sbjct 59356448 TTGAGTTCCTTGCTGAGAACTACATTAATTCTATCCTTTAAGGGTCGATTCTTCTCAGGA 59356389
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| ||||| |||||||| ||||||| ||||| ||| ||
Sbjct 59356388 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 59356341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406149903993796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |