Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq22 158 1e-33 seq12 154 1e-32 seq47 123 2e-23 seq126 114 1e-20 seq30 95.1 1e-14 seq2 82.4 6e-11 >seq22 Length=27210278 Score = 158 bits (174), Expect = 1e-33 Identities = 197/269 (73%), Gaps = 1/269 (0%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| |||| | || | || |||||||| |||| || || | ||| | |||| Sbjct 26912560 TGGGAAAGG-TCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 26912618 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | || |||||||||| | || ||||| || || || | || || |||| ||| Sbjct 26912619 AAATATGTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCA 26912678 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 |||||||||||||| || | |||||||| |||||| || |||| || || |||| || Sbjct 26912679 TGATCATGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGT 26912738 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 | | ||| |||||||| ||||| || || ||||| | || |||||| ||||| || | Sbjct 26912739 CTCTTGATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGA 26912798 Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||||||| || || | ||||| ||| Sbjct 26912799 GGGCATGGCATGGGGGCAACGCCATCAGA 26912827 >seq12 Length=39782659 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||| Sbjct 25689306 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 25689247 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| ||||| ||||| || |||||||| || ||||| |||| | Sbjct 25689246 ACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 25689187 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 25689186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 25689142 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| ||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 25685075 AAATGTCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAAT 25685016 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| | |||| |||||||| ||| || ||||| |||||||| || || ||||| Sbjct 25685015 CCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 25684956 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 || |||||||| | |||||||| || |||| Sbjct 25684955 GACAGCTCTTTAGCATTTGTGGATCC-CTGA 25684926 >seq47 Length=17121399 Score = 123 bits (136), Expect = 2e-23 Identities = 191/268 (71%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 114254 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGC 114313 ||||| ||||||||| || || || || || ||||||||||| ||||| || | Sbjct 7276482 GCCAGAAAATGAGCTCCTTGTGGAGGCTCCTTGAGTTCCCTGCTGAGAACTACATTAATT 7276423 Query 114314 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 114373 || || || | ||||| |||||| || || ||||||||||| ||||| |||||||| ||| Sbjct 7276422 CTATCCCTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATGATC 7276363 Query 114374 ACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAA 114432 |||| ||||| ||| || | ||||| || | |||| | ||| | || || | || Sbjct 7276362 ACCAAATTCTGTTTATCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATGCCTGAA 7276304 Query 114433 ATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-T 114491 || || || | ||| |||| ||||| || ||||| || ||| |||||||| | Sbjct 7276303 TTCATT------CCTGAACGGCGGCCAGGGCAGGTCACCGTTCTTGCCGGTGCCCATGTT 7276250 Query 114492 CTGGACACGCTGCCACGATACCGTTCAG 114519 |||| || | || ||||| | ||| || Sbjct 7276249 CTGG-GACACAGCGACGATGCAGTTTAG 7276223 >seq126 Length=6219632 Score = 114 bits (126), Expect = 1e-20 Identities = 157/213 (74%), Gaps = 10/213 (5%) Strand=Plus/Minus Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349 ||||||||||| ||||| || | || || | | ||||| |||||| || || |||||| Sbjct 45164 TCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 45105 Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCG 114409 ||||| ||||| |||||||| |||||||| ||||| ||| || | ||||| || | | Sbjct 45104 AACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTATCTTCTACTGAAGAGGTTGTG 45045 Query 114410 GTCAAGGCTC-GAAAGTGTTTAAAATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATC 114468 ||| | ||| | || || | || || || | || || || |||| ||||| || Sbjct 45044 GTC-ATTCTCTGGAAATGCCTGAATTCGTTCCTGAG---CAGCG---GCCAGGGCAGGTC 44992 Query 114469 TCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499 ||||| || |||||||||||| ||| |||||| Sbjct 44991 ACCGTTCTTGCCGATGCCCATGTTCTGGGACAC 44959 >seq30 Length=22521080 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/261 (70%), Gaps = 12/261 (5%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| || | || | || || | Sbjct 9522977 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACCAAATTAATTCTATCCTT 9523036 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| |||| ||||||||| ||||||| || Sbjct 9523037 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTGTCTACCCATAATCACCAGATT 9523096 Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 ||| ||||| ||| | ||||| || | ||| | ||| | || | | || || || Sbjct 9523097 CTGTTTACCTTCTAT-TGAAGAAGTTGTAGTC-ATTCTCTGGAAATACCTGAATTCATT- 9523153 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 114498 ||| | || |||| ||||| || || || || ||||| |||||| ||||| | Sbjct 9523154 -----TCTGAGTGGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTCTGG-GA 9523207 Query 114499 CGCTGCCACGATACCGTTCAG 114519 | | || ||||| | ||| || Sbjct 9523208 CACAGCGACGATGCAGTTTAG 9523228 >seq2 Length=71252344 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || ||| ||||||| ||||| || | || || | | |||| |||||| || || Sbjct 59356448 TTGAGTTCCTTGCTGAGAACTACATTAATTCTATCCTTTAAGGGTCGATTCTTCTCAGGA 59356389 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| ||| || Sbjct 59356388 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 59356341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406149903993796