Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq37 279 4e-70 seq3 131 1e-25 seq1056 118 9e-22 seq150 91.5 1e-13 seq22 91.5 1e-13 seq13 86.0 5e-12 seq132 82.4 7e-11 >seq37 Length=19344684 Score = 279 bits (308), Expect = 4e-70 Identities = 595/875 (68%), Gaps = 28/875 (3%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| ||||| || ||||| | |||||||| |||||||| ||||| Sbjct 211330 TACTCTCTTCTCAAAGAAGTTAGTGTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAA 211389 Query 4331 CGGATTAGTTGCGTTGTAATGTTTT-TCACACT---TTAGAGCTACAAGCAATCGGTCAG 4386 ||||| | | || || | | | || || ||| | ||| || ||| | Sbjct 211390 TGGATTCTCTACTCTGAAAACCCTGCTAAAACCCAGTTCCAGC-ATAAG---TCTGTCTG 211445 Query 4387 CTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTA 4446 | ||||| || || || || |||| || ||| || || ||||| | ||||||| | Sbjct 211446 CCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCA 211505 Query 4447 GCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTG-TGATTATATCTTTTATT 4505 || | || | ||||| ||||| || || || ||| | ||||| ||| ||| | Sbjct 211506 AGGCCTCAGTAAGGAACTCCTGTTCCATCCGAACAGCA-CTGATAATTATTTCTCTTACT 211564 Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 | || | |||||||| | |||| || | |||| | || || |||||||| || Sbjct 211565 CTCTCCTCTGATGGTTTGTGTACTTGGTGTTTGAACATCAGGCAAGCGAAATCACAGTGT 211624 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 ||||| || ||||||| | | ||||| |||||||| || | || ||||| | |||| Sbjct 211625 AAACCCTCATCTCTGCCAGTAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGT 211684 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || || ||||| ||||| | ||||| || ||||||||||| |||||||| || || ||| Sbjct 211685 TTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCA 211744 Query 4686 AACGCTACTAATCGGG---ACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCC 4742 || ||| | | || | ||| | ||| ||||||| || ||| || ||| Sbjct 211745 AAGGCTGCAA--CGTGTTCACCATAGGTAGCCT-CTTTGTCCCCAACCCAGAGCAAGGCC 211801 Query 4743 CAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTT 4799 || | || || ||||| || || || || || | ||||| || || | ||| ||| Sbjct 211802 CAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATAGCATTGAAGAGAAATTCCCTT 211861 Query 4800 TTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTAT 4858 | | |||| |||| || |||||||| || || || ||||| |||||||||||||| Sbjct 211862 TCGT----TGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATATATTTCAGAATGTAT 211917 Query 4859 ATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTT 4918 |||| || || || || || || || || || |||||||| | |||||||| | Sbjct 211918 GTTTTTCATGGCCATTTGGAAGCCATAGAAACAGTGGGCTTCTGTGATCTGAACTTCTTG 211977 Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 | ||||| || || |||||||| |||||||| || | ||| |||||||| || |||| Sbjct 211978 GCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATAACTTGCTGCAAAGAAAGCCAG 212037 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA--TCT 5036 ||| || ||||||||||| | || ||||| || || ||||| | |||| || Sbjct 212038 AACGTGGGATATAAAGTATCTCCCCTCGGGCTTCAGGGATTCCCAGT--GCCAAACGTCC 212095 Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGAC 5096 || | | || || || | ||||| || || || ||| | || || || | | Sbjct 212096 TTGGACAGGTCCACCTCCTTGGTGGTCCAGAAGGAGGCCTCCCCCTTCTTATATGTCTGC 212155 Query 5097 CAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||||| || |||| || || | ||||||||| Sbjct 212156 CAGATATCGGGGTACTCGATGGGGAATATGACAAA 212190 >seq3 Length=58292249 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || ||||| || || || || | | ||||| ||||| |||||| || ||||| Sbjct 29419329 GCTCTTGTGAAAACAGACATACAGATAGCGCTTCCTTCTGGGTGTTACGGAAGAGTAGCT 29419270 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 ||| | ||||| ||||| | ||||||||||| || || || || ||||| |||||| | Sbjct 29419269 CCTCGGTCTGGCTTGGCTGAAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGAA 29419210 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGT 31942 || ||||||||||||||||| ||| ||||||||||||| |||||| | | || Sbjct 29419209 GATTATAGAGGAAACGTTGGTGTTGCACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG- 29419152 Query 31943 ATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | ||||| | ||| | | || ||||| ||||| ||| Sbjct 29419151 -TCAAAAAAGATGATCGAATTGCACAACTCATTTGTGAA 29419114 >seq1056 Length=1934 Score = 118 bits (130), Expect = 9e-22 Identities = 160/218 (73%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 31769 CTAGTTAAAACCGATATTCAAAT--TTCTTTACCTTCAGGGTGCTACGGACGAATAGCTC 31826 || || ||||| || || || || | ||| ||||| ||||| || | | || |||||| Sbjct 978 CTTGTGAAAACAGACATACAGATAGTGCTT--CCTTCTGGGTGTTATGAAAGAGTAGCTC 921 Query 31827 CTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAG 31886 | | ||||| ||||| | ||||||||||| || || || || ||||| |||||| || Sbjct 920 CACGGTCTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGAAG 861 Query 31887 ACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTA 31943 | ||||||||||| ||||| ||||| ||| ||||||||| |||||| | | ||| Sbjct 860 ATTATAGAGGAAATGTTGGTGTTGTGCTGTATAATTTTGGCAAAGAAAAGT-TTGAAGTC 802 Query 31944 TAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||||||| ||| | | || || || ||||| ||| Sbjct 801 AAAAAAAGG--GATCGAATTGCACAGCTCATTTGTGAA 766 >seq150 Length=4198560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/171 (72%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| ||||| |||| || ||| | || || | ||||| | || ||| || || |||| Sbjct 3763345 AGCTCTAGTGAAAATGGACATTTAGATAGCTCTTCCTTCTGCATGTTACAGAAGACTAGC 3763404 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | |||||||||| || | || || ||||| | |||| Sbjct 3763405 TCCATGGTCTGGCTTGGCTGCAAAACACTTTACTGATATAGGAGCTGGTGTCACAGATGA 3763464 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 ||| || ||||||| ||||| ||| ||||||||||||| |||||| Sbjct 3763465 AGATTACTGAGGAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAA 3763515 >seq22 Length=27210278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 23199816 GGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 23199875 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 23199876 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 23199933 >seq13 Length=39031659 Score = 86.0 bits (94), Expect = 5e-12 Identities = 114/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 34293 CAAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTC 34349 ||||| |||||| || ||| | ||||||||| ||||||||||| ||| ||||| Sbjct 33377453 CAAAGAAAACAGAAAGAACGACAAACAAATGGTCCAGTATATTTACAAATACACA---AG 33377397 Query 34350 TTACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGC 34409 ||| || || || || |||||||||| ||||||| ||| || ||| |||| || Sbjct 33377396 TTATCCTGACCCCATACTGCTGATGAAAAGTGCTAGAAATAATTGTTGGTCTAAAGATGC 33377337 Query 34410 TGAGTACGGTCTTTACTCAGTATATCAAGGAGGAATA 34446 || || || || || || | |||||||| |||||| Sbjct 33377336 AGAATATGGACTGTATTCCATCTATCAAGGGGGAATA 33377300 >seq132 Length=5918258 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/132 (74%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 |||||| | || || || ||||| ||||| || || ||||||||||||||||| || || Sbjct 973207 ACAAAAACCTT--ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAA 973150 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038 | ||||| || || |||| || || | ||||| || |||||||| || | ||| || Sbjct 973149 GATGTGAGAGATGAAATACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTT 973090 Query 5039 AGTTAAATCAAC 5050 | ||| || || Sbjct 973089 TGATAAGTCGAC 973078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427035620264438