Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq22 141 7e-29 seq12 125 5e-24 >seq22 Length=27210278 Score = 141 bits (156), Expect = 7e-29 Identities = 193/268 (72%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| |||| | || | || |||||| | ||||| || || | ||||| ||||| Sbjct 26912560 TGGGAAAGG-TCTGCGTTCTCACTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 26912618 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | || || ||||||| | || ||||| || || || | || || |||| ||| Sbjct 26912619 AAATATGTGCATCTCCCAAAGCATGTACAAAATCACCTGGCTTCAGGCCCGTGATGTGCA 26912678 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 |||||||||||||| || | |||||||| |||||| || || | || || |||| || Sbjct 26912679 TGATCATGTACGTGAGCAGGGCGTAGCTGGTGATGTTGAAAGGCATACCTAGGCCCACGT 26912738 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | | || |||||||| |||||||| || ||||| | | ||||| ||||| || | Sbjct 26912739 CTCTTGATCTCTGGTACAGCTGACAGGACAGCTCACTGTTCACCACGTAGAACTGGCAGA 26912798 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||| ||||| || || | ||||| || Sbjct 26912799 GGGCATGGCATGGGGGCAACGCCATCAG 26912826 >seq12 Length=39782659 Score = 125 bits (138), Expect = 5e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 25689306 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 25689247 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || || ||||| || ||||| || || ||||| || | Sbjct 25689246 ACACCTAGGCCCATGTCTCCTGATCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 25689187 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 25689186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 25689143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369495103950866