Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq98 183 4e-41 seq14 114 2e-20 >seq98 Length=8319558 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| |||| |||||||||||| || ||||| || ||||||||||| Sbjct 8274848 GTCTGGAACAACTGCTCATCACCCCATTCTGGATGCTCCTGTTTAAGCACATCGCACACT 8274789 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 |||||||| ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 8274788 CTGTTGTGCTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 8274729 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || || || | |||| | || || |||| ||||| |||||||| | Sbjct 8274728 ACTTCCTGTCCCACGGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCG 8274669 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 8274668 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATGATCT 8274620 Score = 163 bits (180), Expect = 4e-35 Identities = 230/323 (71%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323 |||| |||||| ||| ||||| | ||| | | || ||||| || || ||||| | Sbjct 8276575 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCTTTCACGTTATTG 8276516 Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383 |||| ||||||||||| | || | |||| ||| ||| ||||| ||||| || || Sbjct 8276515 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTTGAAACCCACTTCTCCACCAAAA 8276456 Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443 ||||| ||||||||||| | || || || ||||| || |||| || ||||| | |||| Sbjct 8276455 GTGCTTGGCTTCCAGTAGGCGGGAGAACATATGACATTACCCATAAGTCCTTTCAAGGAG 8276396 Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503 || || || || | || | || ||||||| |||||||| | ||||| |||||||| Sbjct 8276395 AATGGTGCTCCAACTTCTACCATAGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 8276336 Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563 |||| | | | |||||||||| || || | ||| || || || || | || || Sbjct 8276335 ACCAGAAGGGCAGGATACAGCTCCATTGCATCAATGTCACCATAGAGTGCTTTCAGCTCT 8276276 Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586 ||||| || || || |||||||| Sbjct 8276275 GCAGCCATTTCTTTCTCTCCTGT 8276253 Score = 127 bits (140), Expect = 3e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 8273703 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 8273644 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| |||| || |||||||| | |||| |||||||||||| Sbjct 8273643 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTGGAGCCCTGGGGATC 8273584 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 8273583 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 8273546 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| || | |||||||| || || | Sbjct 8275439 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCC 8275380 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | || || |||||||||| || ||| | |||| || || | || ||| | Sbjct 8275379 AGTAACATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTAGTTCTGGTCATGAATTT 8275322 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| || | |||||||||||| | | |||||||| | | |||| Sbjct 8275321 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATAC 8275262 Query 9122 GATTTTGGTACTGGAA 9137 |||||||||||||||| Sbjct 8275261 GATTTTGGTACTGGAA 8275246 >seq14 Length=37227512 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||||| || |||| || || || || ||||| ||||||||||| |||| | Sbjct 49273 TCTTGACGATGTTAAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTATTCCGGAG 49332 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 49333 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAAGGAGCCCCAATCTCTATCATAC 49392 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || |||||| | | | |||| ||| | ||||| Sbjct 49393 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCGGGGTAGAACTCCA 49452 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || | || | || || || |||||||| |||||| Sbjct 49453 AGGCATCAATGTCTCCATACAACTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 49508 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || || |||||||| || ||||| || | ||| || || Sbjct 58089 TCACCTATGAGGATGAGGCGGGTCGTCTGGAAGAGCTGCTCATCGCCCCAGGTGGGGTGC 58148 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||||| | || ||||| | ||||| || | ||||||| ||||| |||| | Sbjct 58149 TCAGCTTTCAGCAGGTCACACACACGATTGTGCTCGCGCAGCCAGAGCGTGGCATACAGC 58208 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || ||||||| Sbjct 58209 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA 58251 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 60441 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 60498 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 60499 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 60558 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | || |||| |||||| Sbjct 60559 CAGGTATGAACTTCCTCC 60576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716852730861440