Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20
2011-11-17] 2,686 sequences; 2,608,588,537 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq33 113 4e-20
seq9 102 8e-17
seq71 96.9 3e-15
seq59 91.5 1e-13
seq77 87.8 2e-12
>seq33
Length=21137282
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| | ||||| | ||||| ||||| || ||| ||||| ||||| ||||| ||
Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||| | | || || ||||||||||| || || || || | ||| ||||| | ||
Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| || ||||| ||| ||| || ||||| | ||||| || | |||||||
Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| ||| || || || || ||||| ||||| ||||| |||||||| ||
Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 15373527
>seq9
Length=44311105
Score = 102 bits (112), Expect = 8e-17
Identities = 157/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | ||| || ||||| ||| ||| ||||||||||| ||||| ||||| ||||
Sbjct 3708437 AGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCCG 3708378
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||| || ||||| |||||||| | ||| ||||| | || | | ||||
Sbjct 3708377 CCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGGGATACCCTCC 3708318
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTG---TCGCTCGACTCCACCTCCACC 41821
|||| | ||| |||| |||| || | ||||| || || | ||| ||||| |
Sbjct 3708317 TTGT-CTTGAATTTTGGCTTTGAC--ATTCTCAGTGGTATCACTGGGCTCGACCTCAAGG 3708261
Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || | ||||| || ||||| || || ||||| ||
Sbjct 3708260 GTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220
>seq71
Length=11673789
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/236 (69%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| | ||| || ||| ||||| ||||| |||||
Sbjct 72303 ACAGCCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTC 72244
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
| || ||||| | || || ||||||||||| || || || || | ||| |||||
Sbjct 72243 AGGAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTG 72184
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809
||| | || ||||| ||| ||| || ||| || || | ||||| || | |
Sbjct 72183 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCG--ATGGTGTCACTAGGC 72126
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||||||| || || || || || ||||| ||||| || || |||||||| ||
Sbjct 72125 TCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 72070
>seq59
Length=14671897
Score = 91.5 bits (100), Expect = 1e-13
Identities = 154/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | | || || || ||| ||||||||||||||| ||||| ||
Sbjct 11745124 CCACCTCGGAGACGGAGGATGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAT 11745065
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||| ||||| | || || ||||| || | ||| || |||| | ||||||||| | ||
Sbjct 11745064 AGGTTGCGCCCATCTTCCAGCTGTTTCCTGGCAAAGATCAATCTCTGTTGGTCAGGAGGG 11745005
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| || |||||||| ||| ||| ||| | | | ||||| || | ||| |||
Sbjct 11745004 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACC 11744945
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCT 41858
|| | || || || |||| ||||| ||||| | || ||||
Sbjct 11744944 TCAAGGGTGATGGTCTTACTGGTCAGAGTCTTCAGAAAGATCT 11744902
>seq77
Length=10698663
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 41690 TCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC 41749
|| || || ||||| | || || |||||||||||||| || || || | ||| |||||
Sbjct 10127826 TCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCG 10127767
Query 41750 GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC 41809
| ||| | || ||||| ||| ||| || ||||| | ||||| || | |
Sbjct 10127766 GGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGC 10127707
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||||| || || || || || ||||| ||||| ||||| ||||||||
Sbjct 10127706 TCCACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 10127654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462288478143200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |