Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saimiri_20boliviensis_20boliviensis_20[refseq_20GCF_5F000235385.1_20 2011-11-17] 2,686 sequences; 2,608,588,537 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq33 113 4e-20 seq9 102 8e-17 seq71 96.9 3e-15 seq59 91.5 1e-13 seq77 87.8 2e-12 >seq33 Length=21137282 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | ||||| ||||| || ||| ||||| ||||| ||||| || Sbjct 15373756 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 15373697 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||| | | || || ||||||||||| || || || || | ||| ||||| | || Sbjct 15373696 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 15373637 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||| ||| ||| || ||||| | ||||| || | ||||||| Sbjct 15373636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15373577 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| ||| || || || || ||||| ||||| ||||| |||||||| || Sbjct 15373576 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 15373527 >seq9 Length=44311105 Score = 102 bits (112), Expect = 8e-17 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || ||||| ||| ||| ||||||||||| ||||| ||||| |||| Sbjct 3708437 AGGCGCAGCACTAGGTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCCG 3708378 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || ||||| |||||||| | ||| ||||| | || | | |||| Sbjct 3708377 CCATCCTCCAGCTGTTTACCGGCAAATATCAGACACTGCTGGTCAGGTGGGATACCCTCC 3708318 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTG---TCGCTCGACTCCACCTCCACC 41821 |||| | ||| |||| |||| || | ||||| || || | ||| ||||| | Sbjct 3708317 TTGT-CTTGAATTTTGGCTTTGAC--ATTCTCAGTGGTATCACTGGGCTCGACCTCAAGG 3708261 Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || | ||||| || ||||| || || ||||| || Sbjct 3708260 GTGATGGTCCTGCCCGTGAGGGTCTTCACAAAGATCTGTAT 3708220 >seq71 Length=11673789 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| | ||| || ||| ||||| ||||| ||||| Sbjct 72303 ACAGCCACCCCTCAGACGCAGGACCAGGTACAGGGTTGACTCTTTCTGGATGTTGTAGTC 72244 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | || ||||| | || || ||||||||||| || || || || | ||| ||||| Sbjct 72243 AGGAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGTG 72184 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809 ||| | || ||||| ||| ||| || ||| || || | ||||| || | | Sbjct 72183 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCG--ATGGTGTCACTAGGC 72126 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||||| || || || || || ||||| ||||| || || |||||||| || Sbjct 72125 TCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 72070 >seq59 Length=14671897 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | | || || || ||| ||||||||||||||| ||||| || Sbjct 11745124 CCACCTCGGAGACGGAGGATGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAT 11745065 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||| ||||| | || || ||||| || | ||| || |||| | ||||||||| | || Sbjct 11745064 AGGTTGCGCCCATCTTCCAGCTGTTTCCTGGCAAAGATCAATCTCTGTTGGTCAGGAGGG 11745005 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||| ||| ||| ||| | | | ||||| || | ||| ||| Sbjct 11745004 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTTAATGGTGTCACTGGGCTCGACC 11744945 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCT 41858 || | || || || |||| ||||| ||||| | || |||| Sbjct 11744944 TCAAGGGTGATGGTCTTACTGGTCAGAGTCTTCAGAAAGATCT 11744902 >seq77 Length=10698663 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 41690 TCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC 41749 || || || ||||| | || || |||||||||||||| || || || | ||| ||||| Sbjct 10127826 TCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCG 10127767 Query 41750 GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC 41809 | ||| | || ||||| ||| ||| || ||||| | ||||| || | | Sbjct 10127766 GGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGC 10127707 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 10127706 TCCACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 10127654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462288478143200