Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq517911 95.1 1e-14 seq826513 84.2 2e-11 >seq517911 Length=2699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| ||||| ||||||||||| | || ||||| |||| ||||| Sbjct 1250 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCTTC 1309 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||||||||| |||||||| || || || ||||| || || || |||| ||||| || Sbjct 1310 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1369 Query 16346 ATTAATCGTTCC 16357 | | || |||| Sbjct 1370 ACAACTCTTTCC 1381 >seq826513 Length=1995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16470 TTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCT 16529 |||| || || || || || ||||||||||| |||||||| | ||||| ||| || | Sbjct 645 TTATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAGAATTT 704 Query 16530 GAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 |||| |||||||| || |||||||| | |||||||| ||| ||| |||||| || Sbjct 705 GAAAGCCATAGAAACAACGAGCCTCTGGAATTTGTACCTCCTGACTAAAGCGTTCCACC 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506038117763920