Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20belangeri_20[genbank_20GCA_5F000181375.1_202006-06-08] 841,006 sequences; 2,137,225,476 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq152715 224 1e-53 seq345281 150 2e-31 seq334240 114 2e-20 >seq152715 Length=1387 Score = 224 bits (248), Expect = 1e-53 Identities = 488/717 (68%), Gaps = 24/717 (3%) Strand=Plus/Minus Query 176455 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 176514 |||| | ||| | ||| |||| || || ||| |||| || || || ||| | ||||| | Sbjct 702 ACATCTACCTGCTCAACCTGGCCATCTCCGACCTGCTCTTCCTGTTCACTCTCCCATTCT 643 Query 176515 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 176574 |||| || || ||| || ||||| ||| || || || |||| || |||| Sbjct 642 GGATCTACCATGTTGC---GTGGCATGACTGGGTGTTCGGGGACGCCATGTGCAAGCTGC 586 Query 176575 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 176634 || ||| | | |||| | |||| || || |||| | |||||||||||| || | Sbjct 585 TCTCGGGGCTCTACGACATAGCCTTGTATGGCGAGATCTTCTTCATCATCCTGCTGACGG 526 Query 176635 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 176694 | |||||||| || || | || | || || ||| || || | || || |||| Sbjct 525 TCGACAGGTACCTGGCCATCGTGCACGCCGTGTTTGCCCTGCGGGCCCGGACCGTCACCT 466 Query 176695 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCCCTCCCTGAA 176753 ||||| || || | || |||||| ||||||| | | | || | ||||| ||| Sbjct 465 TCGGCATCGTCTCCAGCGTCGTCACCTGGGGCCTGGCAGTGCTAGCTG-CGCTCCCCGAA 407 Query 176754 TTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCA 176813 ||| |||| | | || |||| ||| || || || | ||| | ||||| Sbjct 406 TTTGTCTTCCGGGAGTCCCCGGATG-----GGTTGG--TC--TGCAACCCTCAGTACCCG 356 Query 176814 GAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGG-TGATTATGTTAAGTCT 176872 ||| | | | |||| |||| |||||| || ||| ||| ||| | || || Sbjct 355 GAGGAGGGGGAAGAGAGCTGGAAGCGCTTCCACGT-GCTGAGGATGAATATCCTGAGCCT 297 Query 176873 CATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAG 176932 | | ||||||||| | ||||| || ||||||| | || |||| || ||| |||| Sbjct 296 CGCCCTCCCTCTGCTCGTGATGGCCGTGTGCTACTCAGGCATCATCAAAACGCTGCTGAG 237 Query 176933 GCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTA 176992 | ||||||| || |||||| ||||||||||| || ||||||| ||||||||||||||||| Sbjct 236 GTGCCCCAGTAAAAAGAAGGACAAGGCCATCCGGGTCATCTTCGTCATCATGGTGGCCTA 177 Query 176993 TTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCT 177052 |||||| || ||||||||||||||| | || || || | || || || | ||| | Sbjct 176 TTTTGTCTTCTGGACACCCTACAACGTGACGCTTCTCCTCTACACTTTCCAAACGACCTT 117 Query 177053 --TCTT-AAC--CTGCAGTGTGCATTGAGCAG-TAACTTGGACATGGCTCTGCTGATAAC 177106 |||| || | || ||||||| || ||| | ||||| |||| |||||| | || Sbjct 116 GGTCTTCGACGACAGCTGTGTGCA--GAACAGAGCGCCTGGACGTGGCGCTGCTGGTGAC 59 Query 177107 AAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGG 177163 | | || |||||| ||||| ||||||||||| ||||||||||| |||||||| Sbjct 58 CGAGATGGTCTCCTACATGCACTGCTGCATCAACCCGGTGATCTACGCCTTCGTGGG 2 Score = 224 bits (248), Expect = 1e-53 Identities = 488/717 (68%), Gaps = 24/717 (3%) Strand=Plus/Minus Query 9569 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 9628 |||| | ||| | ||| |||| || || ||| |||| || || || ||| | ||||| | Sbjct 702 ACATCTACCTGCTCAACCTGGCCATCTCCGACCTGCTCTTCCTGTTCACTCTCCCATTCT 643 Query 9629 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 9688 |||| || || ||| || ||||| ||| || || || |||| || |||| Sbjct 642 GGATCTACCATGTTGC---GTGGCATGACTGGGTGTTCGGGGACGCCATGTGCAAGCTGC 586 Query 9689 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 9748 || ||| | | |||| | |||| || || |||| | |||||||||||| || | Sbjct 585 TCTCGGGGCTCTACGACATAGCCTTGTATGGCGAGATCTTCTTCATCATCCTGCTGACGG 526 Query 9749 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 9808 | |||||||| || || | || | || || ||| || || | || || |||| Sbjct 525 TCGACAGGTACCTGGCCATCGTGCACGCCGTGTTTGCCCTGCGGGCCCGGACCGTCACCT 466 Query 9809 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTT-GTTGTCCCTCCCTGAA 9867 ||||| || || | || |||||| ||||||| | | | || | ||||| ||| Sbjct 465 TCGGCATCGTCTCCAGCGTCGTCACCTGGGGCCTGGCAGTGCTAGCTG-CGCTCCCCGAA 407 Query 9868 TTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCA 9927 ||| |||| | | || |||| ||| || || || | ||| | ||||| Sbjct 406 TTTGTCTTCCGGGAGTCCCCGGATG-----GGTTGG--TC--TGCAACCCTCAGTACCCG 356 Query 9928 GAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGG-TGATTATGTTAAGTCT 9986 ||| | | | |||| |||| |||||| || ||| ||| ||| | || || Sbjct 355 GAGGAGGGGGAAGAGAGCTGGAAGCGCTTCCACGT-GCTGAGGATGAATATCCTGAGCCT 297 Query 9987 CATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAG 10046 | | ||||||||| | ||||| || ||||||| | || |||| || ||| |||| Sbjct 296 CGCCCTCCCTCTGCTCGTGATGGCCGTGTGCTACTCAGGCATCATCAAAACGCTGCTGAG 237 Query 10047 GCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTA 10106 | ||||||| || |||||| ||||||||||| || ||||||| ||||||||||||||||| Sbjct 236 GTGCCCCAGTAAAAAGAAGGACAAGGCCATCCGGGTCATCTTCGTCATCATGGTGGCCTA 177 Query 10107 TTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCT 10166 |||||| || ||||||||||||||| | || || || | || || || | ||| | Sbjct 176 TTTTGTCTTCTGGACACCCTACAACGTGACGCTTCTCCTCTACACTTTCCAAACGACCTT 117 Query 10167 --TCTT-AAC--CTGCAGTGTGCATTGAGCAG-TAACTTGGACATGGCTCTGCTGATAAC 10220 |||| || | || ||||||| || ||| | ||||| |||| |||||| | || Sbjct 116 GGTCTTCGACGACAGCTGTGTGCA--GAACAGAGCGCCTGGACGTGGCGCTGCTGGTGAC 59 Query 10221 AAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGG 10277 | | || |||||| ||||| ||||||||||| ||||||||||| |||||||| Sbjct 58 CGAGATGGTCTCCTACATGCACTGCTGCATCAACCCGGTGATCTACGCCTTCGTGGG 2 >seq345281 Length=2749 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||| || || ||||||| |||||||| |||||||||||| Sbjct 2634 AGGCCTGTGATGTGTGCAATCATATACGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 2575 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| || || | |||||| ||||||||||| ||||| || || || Sbjct 2574 ACGCCCAGGCCCATGTCTCCTGACCTCTGGTAGAGCTGGCAGGACAGCTCACCATCCACC 2515 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| || ||||| || ||||| ||||| Sbjct 2514 ACGTAGAACTGGCAGAGCGCATGGCATGGAGGCAGCGCCAT 2474 >seq334240 Length=2923 Score = 114 bits (126), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 137929 TTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTCATG 137988 || ||||| || ||||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 908 TTGATCTTCGTTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTCACTCATG 967 Query 137989 GCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 || |||||||| ||||| || ||||||| Sbjct 968 GCTTTGTAGACACCTTTCTCTTGGAGCT 995 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 138022 AAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAATCTGTG 138080 ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| ||| Sbjct 2141 AAGGCGCTCTTCACCTGCTCCACAGCCTTGCTCTTGTTCTCACAGGGGAGGAATCGGTG 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583873573384240